Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1163 ATGGCCGGGGCCGTAGTAGGAGGAGCACTTCTCTCAGCTTCTTTCCAAGTTCTATTTGACCGGATGGCTTCTCGCGACGTCCTCACCTTCCTCCGGGAACAGAAACTCAGTGCTACGCTCCTAAGGAAGTTGAAGATGAAATTTCTGGCACTTAAGGCAGTGCTGAATGACGCCGAGGCCAAGCAAATCACGAATTCAGATGTCAAAGATTGGGTGGATGAGCTGAAAGATGTTATGTATGATGCAGAGGACCTAGTGGATGAGATCACCACTGAAGCTTTACGATGCAAGATGGAGTCTGATTCTCAAACCACTGCAACTCAGGTACCGAACATCATCTCTGCCTCGCTTAATCCGTTTGGTGAGGGGATCGAGTCCAGGGTAGAGGGGATCACTGACAAACTAGAATTGCTTGCACAAGAAAAAGATGTTCTAGGATTGAAAGAAGGCGTTGGAGAAAAATTGTCAAAAAGATGGCCGACAACTTCCTTGGTAGAAGAGTCTGGGGTGTACGGTAGGGGTGATAATAAAGAGGAGATAGTTAATTTTTTGTTGTCCCATAACGCAAGTGGGAATGGGATAGGTGTGATCGCCCTGGTGGGTATGGGCGGTATTGGAAAGACCACACTTACTCAGCTGGTCTATAATGACAGGAGAGTGGACAGATATTTTGACCTTAGAGCATGGGTTTGTGTTTCAGACGAATTTGATCTTGTCAGGATAACGAAAACAATTGTTAAGGCAATCGATTCCGGGACTTCTGAAAATTCGTCTGATGAGAATGATTTGAATCTGCTTCAACTTAAACTGAAGGAGAGACTTAGCAGGAAGAAATTCTGTCTTGTCCTTGATGATGTTTGGAATGAAAACTATAATAATTGGGATAGGCTACAAACTCCGTTCACTGTTGGCCTACCTGGAAGTAAGATTATTGTAACTACACGAAGTAATAACGTTGCAACAGTCATGCATTCAGACCGTATTCATCATTTGGGACAGTTATCCTTTGAGGACTGCTGGTCGCTATTTGCAAAACAGGCATTTAAAAATGGAGATTCTAGTCGGCATCCAAAGCTAGAAGAAATTGGCAAAGAGATTGTAAAAAAGTGTAAAGGACTGCCTTTGGCTGCAAAGACCCTCGGGGGTGCCTTATACTCAGAATCACGAGTAGAAGAATGGGAAAATGTATTGAATAGTGAAACCTGGGATTTACCAAATGATGAAATTCTCCCTGCCTTAAGGTTAAGCTATTCTTTTCTTCCTTCCCATTTAAAGCAGTGTTTTGCGTATTGCTCAATTTTTCCTAAGGACTACGAATTTGAAAAGGAAAACTTAATTCTAGTGTGGATGGCAGAAGGTTTTTTGGACCAATCTGCAAGCAAGAAAACAATGGAAAAGGTGGGTGATGGGTACTTTTATGACCTAGTATCAAGGTCATTTTTTCAGAAGTCCAGTAGCCACAAATCATATTTTGTAATGCATGATCTCATCAACGACTTGGCTCAACTTGTTTCGGGAAAATTTTGTGTTCAGTTGAAGGATGGTAAGATGAATGAAATTCCTGAAAAGTTTCGCCACTTATCATACTTTATAAGTGAATATGATCTCTTTGAGAGATTCGAGACCCTTACTAACGTGAATGGCCTTCGGACCTTCTTACCCTTGAACCTAGGCTATTTGCCTAGGTATCACTTGATGGATAAGGTTTCAAAGAATAGGGGACCAGGCGGTTATGATTATTTATCAGGGTTTCAATTGAGTAATAGAGTTCCAAATGATCTATTATCGAAAATTCAATATTTACGAGTGTTGTCATTGTCTTACTATTGGATAATTGATTTGCCTGATACAATTGGAAATTTGAAACACTTGCGCTATTTGGACCTTTCCTACACATCCATCGAAAGGTTACCGGATTCAATTTGTAGCTTGTATAATTTACAAACATTGATATTATCTTTTTGTTGTTGTCTTGTTGAATTGCCTGTAATGATGAGCAAATTGATTAGGTTGCGCCATCTTGATATTAGGCATAGCAAAGTGAAAGAGATGCCAAGTCAATTGGGTCAATTAAAAAGTTTACAAAAATTGACTAATTATAGAGTGGGCAAGGAGAGTGGGCCAAGGGTTGGAGAGTTGAGGGAGCTTTCCCACATTGGTGGCATTCTTCGCATTAAAGAGTTGCAGAATGTGGTCGATGGTAGGGATGCCTCGGAGGCTAATTTGGTAGGCAAGCAGTACCTGAATGATTTGCGGTTGGAGTGGAATGACGATGATGGTGTTGATCAAAATGGAGCAGACATAGTTCTCCACAACTTACTACCTCATTCAAACTTAAAGAGACTCACGATTCAAGGATATGGTGGTTTAAGATTTCCAGATTGGTTGGGAGGTCCCGCAATGCTGATGATCAATATGGTGTCCCTACGTCTCTGGCGTTGTAAGAATGTGTCAGCCTTCCCACCGCTTGGACAACTACCCTCTCTTAAACATTTATATATCAGTGGGGCGGAGGAAGTGGAAAGGGTGGGTGCTGAGTTTTATGGGACTGATTCTTCGTCAACTAAGCCCTCCTTTGTATCCCTAAAAGCTCTGTCATTTTCGTTTATGCCAAAATGGAAGGAATGGTTGTGTTTGGGAAGCCAGGGTGGAGAATTCCCTCGTCTCAAGGAGCTTTATATACAGGATTGTCCCAAGCTAACTGGGGACTTACCAGACCATCTGCCATTGTTGACAAAACTAAATATTGAAGAATGTGAGCAGCTTGTGGCTCCACTTCCAAGGGTTCCAGCCATCCGCGAATTAACGACGAGGAATAGTAGTGGTGTGTTTTTTAGGAGCCCAGCTAGTGATTTCATGCGTCTTGAGAGTTTGATTACTTCAGACATCTCAAAGTGGACGGAACTGCCACCAGTACTGCAGAAGCTCTCGATTGAAAATGCCGACTGTTTGGAGTCCCTACTGGAGGAGGAAATATTGCAAAGCAATACTTGTCTTCAAGATTTGACATTCACAAAATGTTCTTTTTCCAGAACCTTGTGCAGAGTTTGTTTGCCCATTACATTGAAATCATTGCGTATCTATGAATCGAAGAACCTAGAGTTGCTCCTACCTGAGTTCTTCAAATGTCACTTCTCTTTACTAGAACGTTTGAACATCTACTATAGTACTTGCAATTCTCTCTCGTGCTTCCCGCTCAGCATCTTCCCAAGGTTGACTTTTCTTCAGATCTACGAAGTGAGAGGCCTTGAATCCCTCTCCTTTTCAATTTCAGAGGGGGATCCTACATCTTTTGATATCTTGTTCATCAGTGGGTGCCCTAATCTTGTGTCTATTGAATTGCCAGCGCTCAACTTCTCAGGATTTTCCATCTACAATTGCAAGAATCTCAAGTCGCTGTTGCACAACGCTGCATGCTTTCAGTCATTAACATTGAATGGTTGTCCTGAATTGATATTCCCAGTGCAGGGTCTTCCCTCCAACCTAACTTCACTTTCAATTACAAACTGTGAAAAATTCAGATCCCAGATGGAGTTGGGTCTACAAGGTCTGACGTCTCTTAGACGTTTCAGCATTTCAAGTAAATGTGAAGACTTGGAGCTATTTCCAAAGGAATGCCTGCTGCCCTCCACCCTTACCTCTCTCGAAATCTCAGATCTTCCAAATCTCAGGTCTCTGGACAGTAAGGGGCTTCAACTGCTCACCACTCTTCAAAAATTAAAAATCAGTTACTGCCCGAAGCTCCAATCCTTGACAGAAGAGGGGCTGCCCACCTCCCTCTCTTTTCTAACAATTGAAAACTGTCCATTGCTGAAAGATCGGTGCAAGTTTGGGACAGGTGAAGAGTGGCACCATATAGCTCACATTCCACACATTTTGATCGATAACCAACTTTTGTAA 3900 0.4223 MAGAVVGGALLSASFQVLFDRMASRDVLTFLREQKLSATLLRKLKMKFLALKAVLNDAEAKQITNSDVKDWVDELKDVMYDAEDLVDEITTEALRCKMESDSQTTATQVPNIISASLNPFGEGIESRVEGITDKLELLAQEKDVLGLKEGVGEKLSKRWPTTSLVEESGVYGRGDNKEEIVNFLLSHNASGNGIGVIALVGMGGIGKTTLTQLVYNDRRVDRYFDLRAWVCVSDEFDLVRITKTIVKAIDSGTSENSSDENDLNLLQLKLKERLSRKKFCLVLDDVWNENYNNWDRLQTPFTVGLPGSKIIVTTRSNNVATVMHSDRIHHLGQLSFEDCWSLFAKQAFKNGDSSRHPKLEEIGKEIVKKCKGLPLAAKTLGGALYSESRVEEWENVLNSETWDLPNDEILPALRLSYSFLPSHLKQCFAYCSIFPKDYEFEKENLILVWMAEGFLDQSASKKTMEKVGDGYFYDLVSRSFFQKSSSHKSYFVMHDLINDLAQLVSGKFCVQLKDGKMNEIPEKFRHLSYFISEYDLFERFETLTNVNGLRTFLPLNLGYLPRYHLMDKVSKNRGPGGYDYLSGFQLSNRVPNDLLSKIQYLRVLSLSYYWIIDLPDTIGNLKHLRYLDLSYTSIERLPDSICSLYNLQTLILSFCCCLVELPVMMSKLIRLRHLDIRHSKVKEMPSQLGQLKSLQKLTNYRVGKESGPRVGELRELSHIGGILRIKELQNVVDGRDASEANLVGKQYLNDLRLEWNDDDGVDQNGADIVLHNLLPHSNLKRLTIQGYGGLRFPDWLGGPAMLMINMVSLRLWRCKNVSAFPPLGQLPSLKHLYISGAEEVERVGAEFYGTDSSSTKPSFVSLKALSFSFMPKWKEWLCLGSQGGEFPRLKELYIQDCPKLTGDLPDHLPLLTKLNIEECEQLVAPLPRVPAIRELTTRNSSGVFFRSPASDFMRLESLITSDISKWTELPPVLQKLSIENADCLESLLEEEILQSNTCLQDLTFTKCSFSRTLCRVCLPITLKSLRIYESKNLELLLPEFFKCHFSLLERLNIYYSTCNSLSCFPLSIFPRLTFLQIYEVRGLESLSFSISEGDPTSFDILFISGCPNLVSIELPALNFSGFSIYNCKNLKSLLHNAACFQSLTLNGCPELIFPVQGLPSNLTSLSITNCEKFRSQMELGLQGLTSLRRFSISSKCEDLELFPKECLLPSTLTSLEISDLPNLRSLDSKGLQLLTTLQKLKISYCPKLQSLTEEGLPTSLSFLTIENCPLLKDRCKFGTGEEWHHIAHIPHILIDNQLL* 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1163 1299 PANTHER DISEASE RESISTANCE PROTEIN RP 41 919 IPR044974 GO:0006952
Vvi12g1163 1299 FunFam Probable disease resistance protein At1g61300 157 327 - -
Vvi12g1163 1299 Gene3D - 416 503 IPR036388 -
Vvi12g1163 1299 Gene3D Ribonuclease Inhibitor 736 941 IPR032675 -
Vvi12g1163 1299 SMART LRR_typ_2 621 644 IPR003591 -
Vvi12g1163 1299 SMART LRR_typ_2 668 691 IPR003591 -
Vvi12g1163 1299 Gene3D - 34 119 - -
Vvi12g1163 1299 Coils Coil 41 61 - -
Vvi12g1163 1299 Gene3D - 333 415 IPR042197 -
Vvi12g1163 1299 Pfam NB-ARC domain 176 398 IPR002182 GO:0043531
Vvi12g1163 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 431 IPR027417 -
Vvi12g1163 1299 Gene3D Ribonuclease Inhibitor 950 1290 IPR032675 -
Vvi12g1163 1299 Pfam Rx N-terminal domain 11 103 IPR041118 -
Vvi12g1163 1299 SUPERFAMILY L domain-like 492 969 - -
Vvi12g1163 1299 FunFam Probable disease resistance protein At1g63360 417 503 - -
Vvi12g1163 1299 PRINTS Disease resistance protein signature 196 211 - -
Vvi12g1163 1299 PRINTS Disease resistance protein signature 619 635 - -
Vvi12g1163 1299 PRINTS Disease resistance protein signature 273 287 - -
Vvi12g1163 1299 PRINTS Disease resistance protein signature 370 384 - -
Vvi12g1163 1299 Gene3D - 153 329 IPR027417 -
Vvi12g1163 1299 Gene3D Ribonuclease Inhibitor 579 724 IPR032675 -
Vvi12g1163 1299 SUPERFAMILY L domain-like 888 1287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1163 Vvi-Chr12 16912313 16916212 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1163 165 513 WRKY Transcription Factor Family AT5G45050 24.054 6.39e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1163 - - vvi:100242853 2556.56