Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1159 ATGGCCGGGTCTGTAGCAGGAGGAGGAGCACTTCTCTCGGCTTCTCTCCAAGTTCTATTTGATCGGATGGCTTCTCGCGACGTCCTCACCTTCCTCCGGAGACAGAAACTCAGTGAGACGCTCCTAAGGAAGTTGCAGATGAAATTGCTGGAAGTTCAGGCAGTGCTGAATGACGCCGAGGCCAAGCAAATCACGAATTCAGCTGTTAAAGATTGGGTCGATGAGCTGAAAGATGCAGTGTATGATGCGGAGGACCTGGTGGATGATATCACCACTGAAGCTTTACGACGCACGATGGAGTATGATTCTCAAACTCAGGTACGAAACATCATCTTTGGTGAGGGGATCGAGTCCAGGGTAGAGGAGATCACTGACACACTAGAATATCTTGCACAAAAAAAAGATGTTCTCGGGTTGAAAAGAGGCGTTGGAGATAAATTTTCACAAAGATGGCCGACAACTTCCTTGGTAGATGAGTCTGGGGTGTGCGGTAGGGATGGTGATAAGGAGGAGATAGTTAAATTTTTGTTGTCCCATAATGCAAGTGGGAATAAGATAAGTGTGATCGCCCTGGTGGGTATGGGCGGTATTGGAAAGACCACACTTGCTCAGGTGGTCTATAATGATAGGAAAGTGGTGGAATGCTTTGCCCTTAAAGCATGGGTTTGTGTTTCAGACGAATTTGATCTTGTCAGGATAACGAAAACAATTGTTAAGGCAATCGATTCCGGGACTTCTAAAAATTCGTCTGATGACAATGATTTGAATCTGCTTCAACTTAAACTGAAGGAGAGACTTAGCGGGAAGAAATTCTTTCTTGTCCTTGATGATGTTTGGAATGAAAACTATAATAATTGGGATAGGCTACAAACTCCCTTCACTGTTGGCCTACCTGGAAGTAAGATTATTGTAACTACACGTAGTGATAAGGTTGCATCAGTCATGCGTTCAGTCCGTATTCATCATTTGGGACAGTTATCCTTTGACGACTGCTGGTCCCTATTTGCAAAACATGCATTTGAAAATGGAGATTCTAGTCTACATCCAGAACTACAAGAAATTGGCAAAGAGATTGTGAAAAAGTGTGAAGGATTGCCTTTGGCTGCAAAGACCCTCGGGGGTGCCTTATACTCAGAATCACGAGTAGAAGAATGGGAAAATGTATTGAACAGTGAAACTTGGGATTTAGCAAATGATGAAATTCTCCCTGCCTTAAGGTTAAGCTATTCTTTTCTTCCTTCCCATTTAAAGCAGTGTTTTGCATATTGCTCAATTTTTCCTAAAGACTACGAATTTGAAAAGGAAAACTTGATTCTATTATGGATGGCAGAAGGTTTTTTGGACCAATCTGCAAGCAAGAAAACAATGGAAAAGGTGGGTGATGGGTACTTTTATGGCCTAGTATCAAGGTCATTTTTTCAGAAGTCTAGTAGCCACAAATCATATTTTGTAATGCATGATCTCATCAACGACTTGGCTCAACTTGTTTCCGGAAAATTTTGTGTTCAGTTGAAGGATGGTAAGATGAATGAAATTCCTGAAAAGTTTCGCCACTTATCATACTTTATAAGTGAATATGATCTCTTTGAGAGATTCGAGACCCTTACTAACGTGAATGGCCTTCGGACCTTCTTACCCTTGACCCTAGGCTATTCGCCTAGGTATCACTTGATGGATAAGGTTTCAAAGAGTAGGGGACCATGCAATTATGGTTATTCACCATGGTTTCGATTGAGTAATAGAGTTCTAAATGATTTAATATCGAAAGTTCAATATTTGCGGGTGTTGTCATTGTCTTACTATGGGATAATTGATTTGTCTGATACAATTGGAAATTTAAAACACTTGCGCTATTTGGACCTTTCCTACACATCCATCAAAAGGTTACCGGATTCGGTTTGTAGTTTGTATAATTTACAAACATTGATATTATCTTTTTGTAAATATCCTGTTGAATTGCCTATAATGATGTGCAAATTGATAAGGTTGCGCCATCTTGATATTAGGCATAGCAGTGTCAAAGAGATGCCAAGTCAATTGTGTCAATTAAAAAGTTTACAAAAATTGACTAATTATAGAGTGGACAAGAAGAGTGGGACAAGGGTTGGAGAGTTGAGGGAGCTTTCCCACATTGGTGGCATTCTTCGCATTAAAGAGTTGCAGAATGTGGTCGATGGTAGGGATGCCTCGGAGACTAATTTGGTAGGCAAGCAGTACCTGAATGATTTGCGGTTGGAGTGGAATGACGATGATGGTGTTGATCAAAATGGAGCAGACATAGTGCTCAACAACTTACAACCTCATTCAAATTTGAAGAGACTCACGATTCAAGGATATGGTGGTTTAAGATTTCCAGATTGGTTGGGAGGTCCCGCAATGCTGATGATCAATATGGTGTCCCTACGTCTCTGGCTTTGTAAGAATGTGTCAGCCTTCCCACCTCTTGGACAACTACCCTCTCTTAAACATTTATATATCAATGGGGCGGAGAAAGTAGAAAGGGTGGGTGCTGAGTTTTATGGGACTGATCCTTCCTCAACTAAGCCCTCCTTTGTATCCCTAAAAGCTCTGTCGTTTGTGTATATGCCAAAATGGAAGGAATGGCTGTGTTTGGGAGGCCAAGGTGGAGAATTCCCTCGTCTCAAGGAGCTTTATATACATTATTGTCCCAAGCTAACTGGGAACTTACCAGACCATCTGCCATTGTTGACGAAACTAGAGATTACAGAATGTAAGCGGCTTGTGGCTCCACTTCCAAGGGTTTCAGCCATCCGGGAATTAACGACGAGGAATAATGGTCGTGTGTCTTTGATGAGCCCGGCTAGTGATTTCATTTGTCTTGAGAGTTTGATTACTTCAGACATCTCACAGTGGACGAAACTGCCACCAGCACTGCAGAAGCTCTCGATTGAAAAAGCCGACTCTTTGGAGTCCCTACTGGAGGAGGAAATATTGCAAAGCAATACTTGTCTTCAAGATTTGACAATCACAAAATGTTCTTTTTCCAGAACCTTGCGCAGAGTTTGTTTGCCCATTACATTGAAATCATTGCGTATCTATGAATCGAATAACCTAGAGTTGCTCCTACCTGAGTTCTTCAAATGTCACTTCTCTTTACTTGAAAGGTTGGACATCCTCGATAGTACTTGCAATTCTCTCTGCTTCCCGCTCAGCATCTTCCCAAGGTTGACTTCTCTTCGGATCTACAAAGTGAGAGGCCTTGAATCCCTCTCCTTTTCAATTTCAGAGGGGGATCCTACATCTTTTAAATACTTGTCCGTCAGTGGGTGCCCCGATCTTGTGTCTATTGAATTGCCAGCGCTCAATTTCTCACTATTTTTCATCGTCGATTGCTGCGAGAATCTCAAGTCGCTGTTGCACAGAGCTCCATGCTTTCAGTCATTAATATTGGGAGATTGTCCTGAAGTGATATTCCCAATACAGGGTCTTCCCTCCAACCTAAGTTCACTTTCAATTAGAAACTGTGAAAAATTCAGATCCCAGATGGAGTTGGGTCTACAAGGTCTGACGTCTCTTCGACATTTCGACATTGAAAGTCAATGTGAAGACTTGGAGCTATTCCCAAAGGAATGCCTGCTGCCCTCCACCCTTACCTCTCTCAAAATCTCACGTCTTCCAAATCTCAAGTCTCTGGACAGTAAGGGGCTTCAACTGCTCACCACTCTTCAAAAATTAGAGATCAGTTACTGCCCTAAGCTCCAATCCTTGACAGAAGAGAGGCTGCCCACCTCCCTCTCTTTTCTAACAATCGAAAACTGTCCATTGCTGAAAGATCGGTGCAAGGTTGGGACAGGTGAAGATTGGCACCATATGGCTCACATTCCGCACATTACGATAGATGGCCAACTTTTGTAA 3876 0.4239 MAGSVAGGGALLSASLQVLFDRMASRDVLTFLRRQKLSETLLRKLQMKLLEVQAVLNDAEAKQITNSAVKDWVDELKDAVYDAEDLVDDITTEALRRTMEYDSQTQVRNIIFGEGIESRVEEITDTLEYLAQKKDVLGLKRGVGDKFSQRWPTTSLVDESGVCGRDGDKEEIVKFLLSHNASGNKISVIALVGMGGIGKTTLAQVVYNDRKVVECFALKAWVCVSDEFDLVRITKTIVKAIDSGTSKNSSDDNDLNLLQLKLKERLSGKKFFLVLDDVWNENYNNWDRLQTPFTVGLPGSKIIVTTRSDKVASVMRSVRIHHLGQLSFDDCWSLFAKHAFENGDSSLHPELQEIGKEIVKKCEGLPLAAKTLGGALYSESRVEEWENVLNSETWDLANDEILPALRLSYSFLPSHLKQCFAYCSIFPKDYEFEKENLILLWMAEGFLDQSASKKTMEKVGDGYFYGLVSRSFFQKSSSHKSYFVMHDLINDLAQLVSGKFCVQLKDGKMNEIPEKFRHLSYFISEYDLFERFETLTNVNGLRTFLPLTLGYSPRYHLMDKVSKSRGPCNYGYSPWFRLSNRVLNDLISKVQYLRVLSLSYYGIIDLSDTIGNLKHLRYLDLSYTSIKRLPDSVCSLYNLQTLILSFCKYPVELPIMMCKLIRLRHLDIRHSSVKEMPSQLCQLKSLQKLTNYRVDKKSGTRVGELRELSHIGGILRIKELQNVVDGRDASETNLVGKQYLNDLRLEWNDDDGVDQNGADIVLNNLQPHSNLKRLTIQGYGGLRFPDWLGGPAMLMINMVSLRLWLCKNVSAFPPLGQLPSLKHLYINGAEKVERVGAEFYGTDPSSTKPSFVSLKALSFVYMPKWKEWLCLGGQGGEFPRLKELYIHYCPKLTGNLPDHLPLLTKLEITECKRLVAPLPRVSAIRELTTRNNGRVSLMSPASDFICLESLITSDISQWTKLPPALQKLSIEKADSLESLLEEEILQSNTCLQDLTITKCSFSRTLRRVCLPITLKSLRIYESNNLELLLPEFFKCHFSLLERLDILDSTCNSLCFPLSIFPRLTSLRIYKVRGLESLSFSISEGDPTSFKYLSVSGCPDLVSIELPALNFSLFFIVDCCENLKSLLHRAPCFQSLILGDCPEVIFPIQGLPSNLSSLSIRNCEKFRSQMELGLQGLTSLRHFDIESQCEDLELFPKECLLPSTLTSLKISRLPNLKSLDSKGLQLLTTLQKLEISYCPKLQSLTEERLPTSLSFLTIENCPLLKDRCKVGTGEDWHHMAHIPHITIDGQLL* 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1159 1291 Gene3D - 325 407 IPR042197 -
Vvi12g1159 1291 Gene3D Ribonuclease Inhibitor 919 1141 IPR032675 -
Vvi12g1159 1291 SUPERFAMILY L domain-like 484 907 - -
Vvi12g1159 1291 PRINTS Disease resistance protein signature 188 203 - -
Vvi12g1159 1291 PRINTS Disease resistance protein signature 265 279 - -
Vvi12g1159 1291 PRINTS Disease resistance protein signature 611 627 - -
Vvi12g1159 1291 PRINTS Disease resistance protein signature 362 376 - -
Vvi12g1159 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 423 IPR027417 -
Vvi12g1159 1291 Pfam Rx N-terminal domain 12 102 IPR041118 -
Vvi12g1159 1291 Gene3D Ribonuclease Inhibitor 576 918 IPR032675 -
Vvi12g1159 1291 Pfam Leucine rich repeat 593 647 IPR001611 GO:0005515
Vvi12g1159 1291 Gene3D Ribonuclease Inhibitor 1142 1267 IPR032675 -
Vvi12g1159 1291 SMART LRR_typ_2 613 636 IPR003591 -
Vvi12g1159 1291 SMART LRR_typ_2 660 683 IPR003591 -
Vvi12g1159 1291 Pfam NB-ARC domain 167 391 IPR002182 GO:0043531
Vvi12g1159 1291 Gene3D - 146 320 IPR027417 -
Vvi12g1159 1291 FunFam Probable disease resistance protein At1g63360 409 495 - -
Vvi12g1159 1291 FunFam Probable disease resistance protein At1g61300 149 319 - -
Vvi12g1159 1291 Gene3D - 408 495 IPR036388 -
Vvi12g1159 1291 SUPERFAMILY L domain-like 927 1278 - -
Vvi12g1159 1291 Coils Coil 42 62 - -
Vvi12g1159 1291 Gene3D - 29 132 - -
Vvi12g1159 1291 PANTHER DISEASE RESISTANCE PROTEIN RP 42 912 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1159 Vvi-Chr12 16877498 16881373 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1159 186 653 WRKY Transcription Factor Family AT5G45050 23.260 2.96e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1159 - - vvi:104877392 2518.04