Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1156 ATGCCTAAGTCCAAGCGTGATCGACCAGTTACATTATCCAAGACAAAGAAGAAGGGGAGGGGACACAAAGAGTCCATAGTGAATTCGATAAGGCAGGCTGTGGAAAATTACAGTTCGATCTATGTTTTCTCTTTTGAGAACATGAGAAATCTTAAATTCAAGGAATTCAGAGAGAAGCTCAAATCTACCAGCAGGTTTTTCCTTGGATCAAATAAAGTCATGCAAATTGCCATTGGGCGTTCAGTTGCTGATGAGATCAGACCAGGACTTCGTAAAGTTTCTAAGCTTCTTCATGGAGATACTGGGCTCTTTTTTACTAATCTGCCTAAGGAAGAAGTCCAAAGGTTATTTAATGAATATGAAGAATATGATTTTGCAAGGACAGGAAGCACTGCAGTAGAAAAGGTGGAGCTTAAAGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAACCCTTCCTACGCAAGCAAGGGATGCCGGTTCGGTTGAACAAAGGTGTGGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAAGAGGGAACACCATTGTCGCCTGAGTCAGCTCGCATACTGCGTCTACTTGGGATCAAGATGGCTACTTTCCGACTTCACTTGGTTTGCAGATGGAGCCCAGATGAATTTGACCTCTACAAAGAAGGCCTCGATGACTCAGATGTTGAATCCTCATAA 690 0.429 MPKSKRDRPVTLSKTKKKGRGHKESIVNSIRQAVENYSSIYVFSFENMRNLKFKEFREKLKSTSRFFLGSNKVMQIAIGRSVADEIRPGLRKVSKLLHGDTGLFFTNLPKEEVQRLFNEYEEYDFARTGSTAVEKVELKEGPLDQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGTPLSPESARILRLLGIKMATFRLHLVCRWSPDEFDLYKEGLDDSDVESS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1156 229 FunFam Ribosome assembly factor mrt4 29 130 - -
Vvi12g1156 229 Gene3D - 30 211 IPR043141 -
Vvi12g1156 229 SUPERFAMILY Ribosomal protein L10-like 20 142 IPR043141 -
Vvi12g1156 229 CDD Ribosomal_P0_like 22 184 IPR033867 GO:0000027
Vvi12g1156 229 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 222 - -
Vvi12g1156 229 FunFam Ribosome assembly factor mrt4 125 198 - -
Vvi12g1156 229 Gene3D - 125 198 IPR043164 -
Vvi12g1156 229 Pfam Insertion domain in 60S ribosomal protein L10P 126 196 IPR040637 -
Vvi12g1156 229 Pfam Ribosomal protein L10 20 120 IPR001790 -
Vvi12g1156 229 MobiDBLite consensus disorder prediction 1 24 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1156 32 221 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 24.257 4.63e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1156 K14815 - vvi:100244591 456.447