Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1147 ATGGCTTCCACAAGCTCCTTCAGAGCCTCTTCTTCTTCTTCTACTCCTGCCATCCCTCGAACAAGTACTTATGATGTTTTCTTGAGTTTTAGAGGCGAAGACACCCGCTATAATTTCACTGATCACCTCTACAGTGCTTTGGGTAGGAGAGGGATTCACACCTTCAGAGACGATAAACTCAGGAGAGGAGAAGCGATTGCTCCAGAACTCTTGAAAGCCATTGAAGAATCAAGGTCTTCCGTAATTGTTTTCTCTGAAAACTATGCTCATTCGAGATGGTGTTTGGATGAGTTGGTAAAGATCATGGAGTGCCAGAAAGATCCGGCACATGTTGTTTTCCCAATTTTCTATCATGTGGATCCATCCCATGTACGAAAGCAAGAAGGAAGTTTTGGAGAGGCCTTTGCCGGTTATGAAGAAAACTGGAAGGACAAGATACCAAGGTGGAGGAGGGCCTTGACGGAAGCAGCCAATCTTTCTGGATGGCATATACTAGATGGGTATGAGTCCAATCAAATTAAAGAAATAACTAATAACATATTTCGTCAATTGAAATGTAAGAGGCTTGATGTTGGTGCCAATTTAGTTGGTATAGGTTCCCGTGTAAAAGAGATGATTTTGCGATTGCATATGGAATCAAGTGATGTTCGTATTGTTGGGATATGTGGAGTTGGTGGGATAGGTAAGACAACAATCGCAAAAGTTGTTTATAATGAACTTTCTTGTGAATTTGAATGTATGAGCTTTCTTGAAAATATTGGGGAGGTTTCCAATACCCAAGGTTTATCTCACTTACAAAATCAACTTCTTGTTGATGTCCTAGAGGGAGAGGTGAGTCAAAATATGAATGGTGTTGCCCACAAAGCAAGTATGATAAAGGACATTCTCTCATCTAAAAGAGTTTTAATGGTTCTTGATGATGTAGATCATCCAAGTCAATTAGAATATTTACTTGGACATCGTGAATGGCTTGGAGAAGGAAGTAGAGTCATCATAACTACTAGAAATAAACATGTGTTAGCTGTACAAAAAGTGGATAACTTATATGAGGTTAAGGGATTGAATTTTGAAGAAGATTGTGAACTTTTCAGTTTGTATGCCTTTAAACAAAATCTTCCCAAATCAGATTACAGAAACCTCGCATGTCGTGTTGTAGGCTATTGTCAAGGGCTTCCATTAGCTCTAAAAGTTCTAGGTTCTCTCTTATTCAACAAGACAATACCTGAATGGGAAAGTGAATTGCATAAATTGGACAGAGAACCTGAAGCGGAAATTCACAATGTGCTTAAACGAAGCTATGATGGATTAGATCGTACAGAAAAAAATATATTTCTTGATGTTGCATGTTTTTTTAAAGGTGAAGATAGGGATTTTGTGTCAAGAATATTGGATGGTTGTGATTTCCATGCAAAAAGAGGAATAAGAAATCTAAATGATAAGTGTCTTATAACTCTCCCATACAACGAAATACGTATGCATGATTTGATACAACATATGGGCTGGGAAATTGTTCGTGAAAAATTTCCTGATGAGCCAAACAAATGGAGCAGATTGTGGGATCCCTGTGATTTTGAACGTGCACTTACAGCATATGAGGGAATAAAAAGAGTTGAAACAATATCCTTGGACTTGTCTAAATCAAAAGGAGTATGTGTGAGTTCAAATGTTTTCGCAAAGACGACTAGACTTCGATTGCTCAAAGTTCATTCAGGTTTCCATATAGATCACAAATATGGAGATCTTGACAGTGAGGAGGAGATGTATTATTGTTATGGTGTAATTGCACATGCTTCTAAAATGCAACTTGACCGGGGTTTTAAATTTCCTTCTTATGAGTTAAGGTATCTTTGTTGGGATGGATATCCTTTAGATTTTTTACCATCAAACTTTGATGGAGGGAAGCTTGTTGAACTTCACTTGCACTGTAGCAACATAAAACGGTTGTGGCTAGGGAATAAGGATCTTGAAAGGTTAAAGGTCATTGATCTAAGTTACTCAAGGAAGCTCATTCAAATGTCAGAATTCTCAAGAATGCCAAATTTGGAGAGTCTATTTCTTAATGGTTGTGTAAGCTTGATCGATATTCACCCATCTGTTGGAAATCTGAAGAAGCTTACTACCTTAAGCTTGAGAAGCTGTGATAAGCTTAAGAATCTGCCGGATAGCATTTGGGACTTGGAATCTCTTGAGATTCTTAATCTCTCTTATTGCTCAAAGTTTGAGAAATTTCCAGGGAAGGGGGGGAACATGAAAAGTTTAAGGAAGCTTCATTTAAAAGATACTGCTATTAAGGATCTGCCTGATAGCATTGGAGACTTGGAATCTCTTGAGATTCTTGATCTCTCTGATTGCTCAAAGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGTTTAAACCAGCTTCTTTTAAGAAATACTGCTATTAAGGATCTGCCTGATAGCATTGGAGACTTGGAATCTCTTGAGTCTCTTGATGTCTCTGGCTCAAAGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGTTTAAACCAGCTTCTTTTAAGAAATACTGCTATTAAGGATCTGCCTGATAGCATTGGAGACTTGGAATCTCTTGAGTCTCTTGATCTCTCTGATTGCTCAAAGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGCTTAAAGAAGCTTCGTTTAAGAAATACTGCTATTAAGGATCTGCCTGATAGCATTGGAGACTTGAAATCTCTTGAGTTTCTTGATCTCTCTGATTGCTCAAAGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGGTTAAGGGAGCTTCATTTAAAAATTACTGCTATTAAGGATCTTCCCACCAACATTTCTAGGTTGAAAAAACTTAAAAGACTTGTCCTCAGTGACTGCTCAGACCTGTGGGAAGGATTAATAAGCAATCAGCTTTGCAATCTGCAAAAACTTAATATCAGTCAATGCAAAATGGCTGGACAAATTCTGGTGCTTCCTTCAAGTCTAGAAGAAATAGACGCATACCATTGCACAAGCAAGGAAGATTTATCAGGTCTGCTCTGGCTTTGCCACCTCAACTGGTTGAAATCCACAACAGAGGAGTTGAAATGCTGGAAACTCGTTGCTGTTATTCGTGAAAGTAATGGAATTCCAGAGTGGATAAGGTATCAGAACATGGGAAGTGAAGTAACAACAGAGCTTCCAACGAATTGGTATGAAGATCCTCACTTCCTAGGATTTGTCGTATCATGTGTTTATCGGCATATTCCTACATCTGATTTTGATTACCGTGATGTTGATCTCATGTGTGAATTGAATTTACATGGCAATGGATTTGAATTCAAGGGTAAATGCTATCGGTATGATTCGCCTGGTAATTTTAAAGATTTGATAGATCAAGTATGTGTTTGGTGGTATCCTAAGATTGCTATTCGGAAAGAGCATCACCATAAATACACACATATTAATGCTTCATTTAGGGGTCATTGGACAGAGATAAAAAAATGCGGCATCGATCTTATATTTGCGGGAGATCAACAAAATCATATGCCCATGTTGGAGCATCCTCAGAATTCTGGTGACAATGGATCAGCATTACAAGATACCGATGGTAATGTTCATGGGGCTAATCAAGATGATGAACACTACCATATTCCCATGTTGTTAGATCTTCCTGGGAATTTTGGTGACATTGGATCAAGAAGACGTGATGATTCCCTACCCGATGTAGTGGAGGAGCCACATTATAAAAGATTGGGAGCACCCAACACCGATCCCTTGCTTTGA 3801 0.3862 MASTSSFRASSSSSTPAIPRTSTYDVFLSFRGEDTRYNFTDHLYSALGRRGIHTFRDDKLRRGEAIAPELLKAIEESRSSVIVFSENYAHSRWCLDELVKIMECQKDPAHVVFPIFYHVDPSHVRKQEGSFGEAFAGYEENWKDKIPRWRRALTEAANLSGWHILDGYESNQIKEITNNIFRQLKCKRLDVGANLVGIGSRVKEMILRLHMESSDVRIVGICGVGGIGKTTIAKVVYNELSCEFECMSFLENIGEVSNTQGLSHLQNQLLVDVLEGEVSQNMNGVAHKASMIKDILSSKRVLMVLDDVDHPSQLEYLLGHREWLGEGSRVIITTRNKHVLAVQKVDNLYEVKGLNFEEDCELFSLYAFKQNLPKSDYRNLACRVVGYCQGLPLALKVLGSLLFNKTIPEWESELHKLDREPEAEIHNVLKRSYDGLDRTEKNIFLDVACFFKGEDRDFVSRILDGCDFHAKRGIRNLNDKCLITLPYNEIRMHDLIQHMGWEIVREKFPDEPNKWSRLWDPCDFERALTAYEGIKRVETISLDLSKSKGVCVSSNVFAKTTRLRLLKVHSGFHIDHKYGDLDSEEEMYYCYGVIAHASKMQLDRGFKFPSYELRYLCWDGYPLDFLPSNFDGGKLVELHLHCSNIKRLWLGNKDLERLKVIDLSYSRKLIQMSEFSRMPNLESLFLNGCVSLIDIHPSVGNLKKLTTLSLRSCDKLKNLPDSIWDLESLEILNLSYCSKFEKFPGKGGNMKSLRKLHLKDTAIKDLPDSIGDLESLEILDLSDCSKFEKFPEKGGNMKSLNQLLLRNTAIKDLPDSIGDLESLESLDVSGSKFEKFPEKGGNMKSLNQLLLRNTAIKDLPDSIGDLESLESLDLSDCSKFEKFPEKGGNMKSLKKLRLRNTAIKDLPDSIGDLKSLEFLDLSDCSKFEKFPEKGGNMKRLRELHLKITAIKDLPTNISRLKKLKRLVLSDCSDLWEGLISNQLCNLQKLNISQCKMAGQILVLPSSLEEIDAYHCTSKEDLSGLLWLCHLNWLKSTTEELKCWKLVAVIRESNGIPEWIRYQNMGSEVTTELPTNWYEDPHFLGFVVSCVYRHIPTSDFDYRDVDLMCELNLHGNGFEFKGKCYRYDSPGNFKDLIDQVCVWWYPKIAIRKEHHHKYTHINASFRGHWTEIKKCGIDLIFAGDQQNHMPMLEHPQNSGDNGSALQDTDGNVHGANQDDEHYHIPMLLDLPGNFGDIGSRRRDDSLPDVVEEPHYKRLGAPNTDPLL* 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1147 1266 SUPERFAMILY "Winged helix" DNA-binding domain 424 523 IPR036390 -
Vvi12g1147 1266 PRINTS Disease resistance protein signature 771 787 - -
Vvi12g1147 1266 PRINTS Disease resistance protein signature 388 402 - -
Vvi12g1147 1266 PRINTS Disease resistance protein signature 295 309 - -
Vvi12g1147 1266 PRINTS Disease resistance protein signature 218 233 - -
Vvi12g1147 1266 Gene3D - 184 347 IPR027417 -
Vvi12g1147 1266 Pfam Leucine Rich Repeat 634 653 IPR011713 -
Vvi12g1147 1266 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 162 IPR035897 -
Vvi12g1147 1266 Pfam NB-ARC domain 202 436 IPR002182 GO:0043531
Vvi12g1147 1266 MobiDBLite consensus disorder prediction 1193 1217 - -
Vvi12g1147 1266 Gene3D - 19 183 IPR035897 -
Vvi12g1147 1266 MobiDBLite consensus disorder prediction 1238 1266 - -
Vvi12g1147 1266 Pfam TIR domain 24 186 IPR000157 GO:0007165
Vvi12g1147 1266 SMART LRR_typ_2 843 866 IPR003591 -
Vvi12g1147 1266 SMART LRR_typ_2 797 820 IPR003591 -
Vvi12g1147 1266 SMART LRR_typ_2 750 773 IPR003591 -
Vvi12g1147 1266 SMART LRR_typ_2 890 913 IPR003591 -
Vvi12g1147 1266 SMART LRR_typ_2 702 726 IPR003591 -
Vvi12g1147 1266 SMART LRR_typ_2 937 960 IPR003591 -
Vvi12g1147 1266 Gene3D Ribonuclease Inhibitor 939 1040 IPR032675 -
Vvi12g1147 1266 MobiDBLite consensus disorder prediction 1238 1257 - -
Vvi12g1147 1266 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 186 - -
Vvi12g1147 1266 Pfam C-JID domain 1053 1183 IPR045344 -
Vvi12g1147 1266 SUPERFAMILY RNI-like 694 1035 - -
Vvi12g1147 1266 SMART till_3 23 159 IPR000157 GO:0007165
Vvi12g1147 1266 Gene3D - 353 437 IPR042197 -
Vvi12g1147 1266 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 801 IPR044974 GO:0006952
Vvi12g1147 1266 ProSiteProfiles TIR domain profile. 22 184 IPR000157 GO:0007165
Vvi12g1147 1266 MobiDBLite consensus disorder prediction 1193 1211 - -
Vvi12g1147 1266 Gene3D Ribonuclease Inhibitor 743 938 IPR032675 -
Vvi12g1147 1266 Gene3D Ribonuclease Inhibitor 538 742 IPR032675 -
Vvi12g1147 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 446 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1147 Vvi-Chr12 16746091 16752395 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1147 868 994 WRKY Transcription Factor Family AT4G12020 34.884 7.07e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1147 - - vvi:100256601 2474.89