Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1143 ATGGCTTCCACAAGCTCCTTCAGAGCCTCTTCTTCTTCTTCTACTCCTTCCATCCCTCGAACAAGTACTTATGATGTTTTCTTGAGTTTTAGAGGCGCAGACACCCGCTCTAATTTCACTGATCACCTCTACAGTGCTTTGGGTAGGAGAGGGATTCGCACCTTCAGAGACGATAAACTCAGGGAAGGAGAAGCGATTGGTCCAGAACTCTTGACAGCCATCGAAGAATCAAGGTCTTCCGTAATTGTTTTCTCTGAAAACTATGCTCATTCGACATGGTGTTTGGATGAGTTGGTAAAGATCATGGAGCGCCACAAAGATCGGGGACATGCTGTTTTCCCAATTTTCTATCACGTGGATCCATCCCATGTACGAAGGAAAACAGAAAGTTTTGGAAAGGCCTTTGCCGGTTATGAAGGAAACTGGAAGGACAAGATACCACGGTGGAAGACGGCCTTGACGGAAGCAGCCAATCTTTCTGGATGGCATCAACGGGATGGGTCTGAGTCCAATAAAATTAAAGAAATAACTGATATCATATTCCATCGATTGAAATGTAAGAGGCTTGATGTTGGTGCCAATTTAGTTGGTATAGATTCCCATGTAAAAGAGATGATTTTGCGGTTGCATATGGAATCAAGTGATGTTCGTATTGTTGGGATATACGGAGTTGGGGGGATGGGTAAGACTACCATCGCAAAAGTTATATATAATGAACTTTCTTGTGAATTTGAATGTATGAGCTTTCTTGAAAATATTAGGGAGGTTTCCAATCCCCAAGTTTTATATCACTTACAAAATCAACTTCTTGGTGATATCCTAGAGGGAGAGGGGAGTCAAAATATAAATAGTGTTGCCCACAAAGCAAGTATGATAAAGGACATTCTCTCATCTAAAAAAGTTTTTATGGTTCTTGATGATGTTGATGATCCAAGTCAATTAGAAAATTTACTTGGACATCGTGAATGGCTTGGAGAAGGAAGTAAAGTCATCATAACAACTAGAGATAAACATGTGTTAGCTGTACAAGAAGTGGATGTCTTATATGAGGTTAAGGGATTGAATTTTAAAGAAGCTCATGAACTTTTCAGTTTGTATGCCTTTAAACAAAATCTTCCCCAATCAAACTATAGAGACCTCTCACATCGTGTTGTAGGCTATTGTCAAGGGCTTCCATTAGCTCTAAAAGTTCTAGGTTCTCTCTTATTCAAGAAGACAATACCTCAATGGGAAAGTGAATTGGATAAATTGGACAAAGAACCTGAGATGAAAATTCACAATGTGCTTAAACGAAGCTATGATGGATTAGATCGTACAGAAAAAAAAATATTTCTTGATGTTGCATGTTTTTTTAAAGGTGAAGAAGATAGGGATTTTGTGTCAAGAATATTGGATGGTTGTCATTTCCATGCGGAAAGAGGAATAAGAAATCTAAATGATCGGTGTCTTATAACTCTTCCATACAACCAAATACATATGCATGATTTGATACGACAGACGGGTTGGGAAATTGTTCGTGAAAAATTTCCTAATGAGCCAAACAAATGGAGCAGATTGTGGGATACCCAGGATATTCAACGGGCACTTAGAACATATGAGGGAATAGAAGGAGTTGAAACAATAGACTTGAACTTGTCTGATTTTGAAAGAGTATGCTTCAATTCAAATGTTTTCTCAAAGATGACTAATCTTCGATTGCTCAGAGTTCATTCAGATGACTATTTCGATCCTTATTCTCATGATGATATGGAGGAGGAGGAGGACGAGGAGGACGAGGAGGAGGAGGAGGAGAAGGAGAAGGTAGATCGTTATTGTGAAGAAATGATTGATTCTGTAATGAAAACTGCTTCTAAAATGCACCTTGACCCGGATTTTGAAATCCCTTCTTTTGAGTTAAGTTATCTTTGTTGGGATGGGTATCCTTTAGGTTTTTTATCATCAAATTTTAATGGAAAGAACCTTGTTGAACTTCACTTGAAGTGTAGCAACATAAAACAACTATGGCAAGGGAAGAAGGATCTTCAAAGTTTAAAGGTCATTGATCTAAGTCACTCAAACAAGCTCGTTCAAATGCCAGAATTCTCAAGCATGCCAAATTTGGAAGAACTAATTCTTAAAGGTTGTGTAAGCTTGATCAATATTGACCCATCTGTTGGAGATCTCAAGAAGCTTACTACCTTAGATTTAAGGGGGTGTGTTAAGCTTAAGGGTTTACCAAGTAGCATTAGCAACTTGGAAGCTCTTGAATGTCTTGATCTTACTAGGTGCTCAAGCTTTGACAAGTTTGCAGAAATTCAAGGAATTCAAGGAAATATGAGTAGTTTAACGCATCTATATTTGCGCAAGACTGCTATTAGAGAACTTCCAAGTAGCATTGACTTAGAATCTGTTGAGATTCTTGATCTCTCTGATTGTTCTAAGTTTGAGAAATTTCCAGAGAACGGAGCAAACATGAAAAGTTTAAATGATCTTCGTTTAGAGAATACTGCTATTAAAGAACTCCCAACAGGTATTGCCAACTGGGAATCTCTTGAGATTCTTGATCTCTCTTATTGCTCAAAGTTTGAGAAATTTCCAGAGAAGGGAGGGAACATGAAAAGTTTAAAGAAGCTTCGTTTTAATGGTACTTCTATTAAGGATCTGCCTGATAGCATTGGAGACTTGGAATCTCTTGAGATTCTTGATCTCTCTTATTGCTCAAAGTTTGAGAAATTTCCAGAGAAGGGAGGGAACATGAAAAGTTTAAAGAAGCTTCGTTTTAATGGTACTTCTATTAAGGATCTGCCTGATAGCATTGGAGACTTGGAATCTCTTGAGATTCTTGATCTCTCTTATTGCTCAAAGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGTTTAAAGAAGCTTCATTTAAAAAATACTGCTATTAAGGATCTGCCGGATAGCATTGGAGACTTGGAATCTCTTGAGATTCTTGATCTCTCTAAGTGCTTAAAGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGTTTAAAGAAGCTTTCTTTAATAAATACTGCTATTAAGGATCTGCCGGATAGCGTTGGAGACTTAGAATCTCTTGAGATTCTTCATCTCTCTGAGTGCTCAAAGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGTTTAAAGGAGCTTTATTTAAGAAATACTGCTATTAAGGATCTGCCTGATAGCATTGGAGACTTGGAATCTCTTGAGTCTCTTGATCTCTCTGATTGCTCAAAGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAAATTAAAGCAGTTTCTTTAA 3324 0.3803 MASTSSFRASSSSSTPSIPRTSTYDVFLSFRGADTRSNFTDHLYSALGRRGIRTFRDDKLREGEAIGPELLTAIEESRSSVIVFSENYAHSTWCLDELVKIMERHKDRGHAVFPIFYHVDPSHVRRKTESFGKAFAGYEGNWKDKIPRWKTALTEAANLSGWHQRDGSESNKIKEITDIIFHRLKCKRLDVGANLVGIDSHVKEMILRLHMESSDVRIVGIYGVGGMGKTTIAKVIYNELSCEFECMSFLENIREVSNPQVLYHLQNQLLGDILEGEGSQNINSVAHKASMIKDILSSKKVFMVLDDVDDPSQLENLLGHREWLGEGSKVIITTRDKHVLAVQEVDVLYEVKGLNFKEAHELFSLYAFKQNLPQSNYRDLSHRVVGYCQGLPLALKVLGSLLFKKTIPQWESELDKLDKEPEMKIHNVLKRSYDGLDRTEKKIFLDVACFFKGEEDRDFVSRILDGCHFHAERGIRNLNDRCLITLPYNQIHMHDLIRQTGWEIVREKFPNEPNKWSRLWDTQDIQRALRTYEGIEGVETIDLNLSDFERVCFNSNVFSKMTNLRLLRVHSDDYFDPYSHDDMEEEEDEEDEEEEEEKEKVDRYCEEMIDSVMKTASKMHLDPDFEIPSFELSYLCWDGYPLGFLSSNFNGKNLVELHLKCSNIKQLWQGKKDLQSLKVIDLSHSNKLVQMPEFSSMPNLEELILKGCVSLINIDPSVGDLKKLTTLDLRGCVKLKGLPSSISNLEALECLDLTRCSSFDKFAEIQGIQGNMSSLTHLYLRKTAIRELPSSIDLESVEILDLSDCSKFEKFPENGANMKSLNDLRLENTAIKELPTGIANWESLEILDLSYCSKFEKFPEKGGNMKSLKKLRFNGTSIKDLPDSIGDLESLEILDLSYCSKFEKFPEKGGNMKSLKKLRFNGTSIKDLPDSIGDLESLEILDLSYCSKFEKFPEKGGNMKSLKKLHLKNTAIKDLPDSIGDLESLEILDLSKCLKFEKFPEKGGNMKSLKKLSLINTAIKDLPDSVGDLESLEILHLSECSKFEKFPEKGGNMKSLKELYLRNTAIKDLPDSIGDLESLESLDLSDCSKFEKFPEKGGNMKKLKQFL* 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1143 1107 SUPERFAMILY L domain-like 834 1105 - -
Vvi12g1143 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 446 IPR027417 -
Vvi12g1143 1107 MobiDBLite consensus disorder prediction 578 601 - -
Vvi12g1143 1107 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 186 - -
Vvi12g1143 1107 Coils Coil 580 607 - -
Vvi12g1143 1107 ProSiteProfiles TIR domain profile. 22 184 IPR000157 GO:0007165
Vvi12g1143 1107 Pfam TIR domain 24 185 IPR000157 GO:0007165
Vvi12g1143 1107 SUPERFAMILY "Winged helix" DNA-binding domain 424 529 IPR036390 -
Vvi12g1143 1107 Gene3D Ribonuclease Inhibitor 912 1107 IPR032675 -
Vvi12g1143 1107 Gene3D Ribonuclease Inhibitor 766 911 IPR032675 -
Vvi12g1143 1107 SUPERFAMILY L domain-like 617 902 - -
Vvi12g1143 1107 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 162 IPR035897 -
Vvi12g1143 1107 Gene3D - 18 189 IPR035897 -
Vvi12g1143 1107 Gene3D Ribonuclease Inhibitor 531 765 IPR032675 -
Vvi12g1143 1107 SMART LRR_typ_2 1006 1029 IPR003591 -
Vvi12g1143 1107 SMART LRR_typ_2 959 982 IPR003591 -
Vvi12g1143 1107 SMART LRR_typ_2 721 745 IPR003591 -
Vvi12g1143 1107 SMART LRR_typ_2 912 935 IPR003591 -
Vvi12g1143 1107 SMART LRR_typ_2 818 841 IPR003591 -
Vvi12g1143 1107 SMART LRR_typ_2 865 888 IPR003591 -
Vvi12g1143 1107 SMART LRR_typ_2 1053 1076 IPR003591 -
Vvi12g1143 1107 SMART LRR_typ_2 772 795 IPR003591 -
Vvi12g1143 1107 SMART LRR_typ_2 674 698 IPR003591 -
Vvi12g1143 1107 Gene3D - 353 437 IPR042197 -
Vvi12g1143 1107 Gene3D - 190 347 IPR027417 -
Vvi12g1143 1107 PRINTS Disease resistance protein signature 388 402 - -
Vvi12g1143 1107 PRINTS Disease resistance protein signature 672 688 - -
Vvi12g1143 1107 PRINTS Disease resistance protein signature 295 309 - -
Vvi12g1143 1107 PRINTS Disease resistance protein signature 218 233 - -
Vvi12g1143 1107 Pfam Leucine Rich Repeat 653 672 IPR011713 -
Vvi12g1143 1107 SMART till_3 23 159 IPR000157 GO:0007165
Vvi12g1143 1107 Pfam NB-ARC domain 200 435 IPR002182 GO:0043531
Vvi12g1143 1107 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 916 IPR044974 GO:0006952
Vvi12g1143 1107 MobiDBLite consensus disorder prediction 578 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1143 Vvi-Chr12 16671797 16677604 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1143 766 988 WRKY Transcription Factor Family AT4G12020 32.411 2.64e-18 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1143 - - vvi:104881011 2142.47