Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1135 ATGGAGAGGAATTGCACAAGTGATGGATTCTTTTTTGCTGTGAAGGAGGTTTCATTGCTTGATCAAGGGGGCAAGGGCAAACAAAGCATTTATCAACTTGAACAGGAGATTTCTCTTTTAAGTCAGTTGGAACATGAGAACATAGTTCGGTATTATGGCACAAATAAGGATGACTCTAAACTTTATATCTTCCTTGAGCTTGTGACGAAAGGTTCACTTTTAAGCCTTTATCAAAAGTATCATTTGCAGGAAAGCCAAGCCTCGGTCTACACAAAGCAGATTTTAAATGGTTTGAAATATCTACATGAGCAAAATGTAGTTCACAGGGATATCAAATGTGCAAATATATTGGTGGATGTACATGGATCTGTGAAAATTGCGGATTTTGGATTGGCAAAGGCAACCAAATTGAATGATGTAAAATCTTGTAGAGGAACACCATTCTGGATGGCCCCAGAGGTTGTTAATTGGAAAAATGAGGGCTATGGGCTTGCAACTGATATATGGAGCCTTGGATGCACTGTGTTGGAGATGTTAACTCGTCGACCCCCATATTCCCACTTGGAAGGCGCAACCAAATTGAATGATGTAAAATCTTTTAAAGGGACACTACGCTGGATGGCCCCAGAGGTATTTAATCAGAAAAATGAGGGCTATGGGCTTGCAGTTAATATATGGAGCCTTGGATGCACTGTGTTAGAGATGTTGACTTGTCGACCCCCATATTCCAACATGGAAGACGGGCAAGTGATATCAAAAATTTACAGGAGTGAACCTCCCGATGTTCCTGATTCCTTCTCATCAGATGCCCGAGATTTTATCCTCAAATGCTTGCAAGTCAACCCTAGTGATCGGCCTACTGCTGGTGAGTTGCTGGACCATCCATTTGTGAAGAGGCCATCTGGCCCTCAATCTCCTCGTACGAGTGGAATACAACCTTAA 942 0.4204 MERNCTSDGFFFAVKEVSLLDQGGKGKQSIYQLEQEISLLSQLEHENIVRYYGTNKDDSKLYIFLELVTKGSLLSLYQKYHLQESQASVYTKQILNGLKYLHEQNVVHRDIKCANILVDVHGSVKIADFGLAKATKLNDVKSCRGTPFWMAPEVVNWKNEGYGLATDIWSLGCTVLEMLTRRPPYSHLEGATKLNDVKSFKGTLRWMAPEVFNQKNEGYGLAVNIWSLGCTVLEMLTCRPPYSNMEDGQVISKIYRSEPPDVPDSFSSDARDFILKCLQVNPSDRPTAGELLDHPFVKRPSGPQSPRTSGIQP* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1135 313 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 7 191 - -
Vvi12g1135 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 106 118 IPR008271 GO:0004672|GO:0006468
Vvi12g1135 313 FunFam Protein kinase, putative 1 192 - -
Vvi12g1135 313 FunFam Mitogen-activated protein kinase kinase kinase 19 193 307 - -
Vvi12g1135 313 Pfam Protein kinase domain 8 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1135 313 Pfam Protein kinase domain 196 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1135 313 Gene3D Transferase(Phosphotransferase) domain 1 2 193 - -
Vvi12g1135 313 SUPERFAMILY Protein kinase-like (PK-like) 197 301 IPR011009 -
Vvi12g1135 313 Gene3D Transferase(Phosphotransferase) domain 1 194 300 - -
Vvi12g1135 313 MobiDBLite consensus disorder prediction 282 313 - -
Vvi12g1135 313 ProSiteProfiles Protein kinase domain profile. 1 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1135 313 SUPERFAMILY Protein kinase-like (PK-like) 6 189 IPR011009 -
Vvi12g1135 313 PIRSF ILK 189 294 - -
Vvi12g1135 313 PIRSF ILK 11 197 - -
Vvi12g1135 313 SMART serkin_6 5 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1135 Vvi-Chr12 16523826 16552015 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1135 6 300 MAP Kinase Kinase Kinase AT4G08500 55.405 1.57e-102 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi12g1135 Pkinase 1.6e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1135 K13414 - vvi:100241228 353.599