Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1130 ATGCGAAATCATCTTTCCCAAAACTTGGTCATGAAAAACATAGTGAGTAGGGATGACTCTAAAGTTTATATCTTCCTTGAGCTTGTGACAAAAGGTTCACTTTTAAGTCTTTATCAAAAGTATCATTTGCGAGAAAGCCAAGCCTCGGCCTACATAAGGCAGATTTTAAATGGTTTGAAATATCTACATGAGCAAAATGTAGTTCACAGGGATATCAAATGTGCTAATATATTGGTGGATGTAAATGGATCTATGAAAATTGCAGATTTTGGATTGGCAAAGGCACCCAAATTTAATGTTGTAAAATCTTGTAAAGGGACACCATTCTGGATGGAGCCAGAGTATCTTGAAGGGTTAAGGGTCATTGATCTAAGTTACTCAAGGGAGCTCATTCAAATGTTAGAATTCTCAAGCATGCCAAATTTGGAGAGACTAATTCTTCAAGGTTGTTTAAGCTTGATCGATATTCACCCATCTGTTGGAAATATGAAGAAGCTTACTACCTTAAGTTTGAGAGGGTGTGATAACCTTAAGGATCTGCCAGATAGCATTGGAGACTTGGAATCTCTTGAGATTCTTGATCTCACAGATTGCTCAAGGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGCTTAAAGGAGCTTTTTTTAAGGAATACTGCTATTAAGGATCTGCCTAATAGCATTGGAAACTTGGAATCTCTTAAGATTCTTTATCTCACAGATTGCTCAAAGTTTGATAAATTTCCGGAGAAAGGAGGGAATATGAAAAGTTTAAAGGAGCTTTCTTTAATTAATACTGCTATTAAGGATCTGCCTGATAGCATTGGAGACTTGGAATCTCTTGAGACTCTTGATCTCTCTGATTGCTCAAAGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGTTTAAAGGAGCTTTTTTTAATTAAAACTGCTATTAAGGATCTGCCTAATAGCATTGGAGACTTGGGATCTCTTGAGGTTCTTGATCTCTCTTATTACTCAAGGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGTTTAGAGGTGCTTATTTTAAAGAATTCTGCTATTAAGGATCTGCCTGATAGCATTGGAGACTTGGAATCTCTTGAGACTCTTGATCTCTCTGATTGCTCAAGGTTTGAGAAATTTCCGGAGAAGGGAGGGAATATGAAAAGTTTAGAGAATCTTTTTTTAATTAATACTGCTATTAAGGATCTGCCTGATAGCATTGGAGACTTGGAATCTCTTGAGATTCTTGATCTCTCTGATTGCTCAAAGTTTGAGAAATTTCCGGAGATGAAGAGAGGCATGAAACATCTGTACAAACTTAATCTAAGACGTACTACAATTGAAGAGTTGACCTCCTCAATAGATAATCTCAGTGGGCTTCGGAACTTAATTATAGCAGAGTGCAAAAGCTTGAGGAGTCTTCCCGACAACATTTCTAGGTTGAAATTTCTTGAAACACTCATCCTTAGTGGCTGCTCAGACCTGTGGGAAGGATTAATAAGCAATCAACTTTGCAACCTGGGAAAACTTAATATCAGTCAATGCAAAATGGCTGGACAGATTCTGGAGCTTCCTTCAAGTCTAGAAGAAATAGACGCACACGATTGCAGAAGCAAGGAAGATTTATCAAGTCTGCTCTGGATTTGTCACCTCAACTGGTTGAAATCCACGACAGAGGAGTTGAAATGCTGGAAACTCAGAGCTATTATTCCAGAAAATAGTGGAAATCCAGAGTGGATAAGGTATCAGAACTTGGGAACTGAAGTAACAACGGAGCTTCCAACGAATTGGTATGAAGATCCTGACTTCCTAGGATTTGTTGTATCATGTGTTTGTCGGTCTATTCCTACATCTGACGGCCACAGTTATTTTCTCGGTTGTGCATTAAAGTTACATGGTAATGGATTTGAATTCAAAGATAAATGCTTGTTTGACTGCCAGTGCAAGTGCCATGGTATTAATGATTTGGTAGATCAAGTATGGGTTTGGTGGTATCCTAAGATTGCTATTCCGAAAGAGCATCACCATAAATACACACATATTAATGCTTCATTTAGGGGTAAGTGGACAGAGATAAAAAAATGCGGCATCAATCTTATATTTGCGGGAGATCAACAAAATCATATGCCCATGTTGGAGCATCCTCAGAATTCTGGTGACGATGGATCAGCATTACAAGATACCGATGGTAATGTTCATGGGGCTAATCAAGATGATGAACACTACAATATTCCCATGTTGTTAGATCTTCCTGGGAATTTTGGTGACATTGGATCAGTAATACTTGAAGGCACTGATGGAAACCGTAAGAGAAGACGTGATGATTCCTTACCCGATGTAGTGGAGGAGCCACATTATAAAAGATTGGGAGCACCCAACACCCACCTCTCGCTTTGA 2433 0.3872 MRNHLSQNLVMKNIVSRDDSKVYIFLELVTKGSLLSLYQKYHLRESQASAYIRQILNGLKYLHEQNVVHRDIKCANILVDVNGSMKIADFGLAKAPKFNVVKSCKGTPFWMEPEYLEGLRVIDLSYSRELIQMLEFSSMPNLERLILQGCLSLIDIHPSVGNMKKLTTLSLRGCDNLKDLPDSIGDLESLEILDLTDCSRFEKFPEKGGNMKSLKELFLRNTAIKDLPNSIGNLESLKILYLTDCSKFDKFPEKGGNMKSLKELSLINTAIKDLPDSIGDLESLETLDLSDCSKFEKFPEKGGNMKSLKELFLIKTAIKDLPNSIGDLGSLEVLDLSYYSRFEKFPEKGGNMKSLEVLILKNSAIKDLPDSIGDLESLETLDLSDCSRFEKFPEKGGNMKSLENLFLINTAIKDLPDSIGDLESLEILDLSDCSKFEKFPEMKRGMKHLYKLNLRRTTIEELTSSIDNLSGLRNLIIAECKSLRSLPDNISRLKFLETLILSGCSDLWEGLISNQLCNLGKLNISQCKMAGQILELPSSLEEIDAHDCRSKEDLSSLLWICHLNWLKSTTEELKCWKLRAIIPENSGNPEWIRYQNLGTEVTTELPTNWYEDPDFLGFVVSCVCRSIPTSDGHSYFLGCALKLHGNGFEFKDKCLFDCQCKCHGINDLVDQVWVWWYPKIAIPKEHHHKYTHINASFRGKWTEIKKCGINLIFAGDQQNHMPMLEHPQNSGDDGSALQDTDGNVHGANQDDEHYNIPMLLDLPGNFGDIGSVILEGTDGNRKRRRDDSLPDVVEEPHYKRLGAPNTHLSL* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1130 810 Pfam C-JID domain 589 716 IPR045344 -
Vvi12g1130 810 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 272 381 - -
Vvi12g1130 810 SUPERFAMILY Protein kinase-like (PK-like) 16 121 IPR011009 -
Vvi12g1130 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 67 79 IPR008271 GO:0004672|GO:0006468
Vvi12g1130 810 Gene3D Ribonuclease Inhibitor 121 247 IPR032675 -
Vvi12g1130 810 Gene3D Ribonuclease Inhibitor 248 441 IPR032675 -
Vvi12g1130 810 SUPERFAMILY RNI-like 116 339 - -
Vvi12g1130 810 Pfam Protein kinase domain 7 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1130 810 SMART LRR_typ_2 258 281 IPR003591 -
Vvi12g1130 810 SMART LRR_typ_2 211 234 IPR003591 -
Vvi12g1130 810 SMART LRR_typ_2 163 187 IPR003591 -
Vvi12g1130 810 SMART LRR_typ_2 305 328 IPR003591 -
Vvi12g1130 810 SMART LRR_typ_2 399 422 IPR003591 -
Vvi12g1130 810 SMART LRR_typ_2 352 375 IPR003591 -
Vvi12g1130 810 Gene3D Ribonuclease Inhibitor 442 599 IPR032675 -
Vvi12g1130 810 ProSiteProfiles Protein kinase domain profile. 1 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1130 810 Gene3D Transferase(Phosphotransferase) domain 1 3 120 - -
Vvi12g1130 810 SMART serkin_6 1 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1130 810 MobiDBLite consensus disorder prediction 721 750 - -
Vvi12g1130 810 SUPERFAMILY L domain-like 304 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1130 Vvi-Chr12 16375557 16414604 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1130 7 116 MAP Kinase Kinase Kinase AT4G08500 66.364 2.10e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi12g1130 Pkinase 1.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1130 - - vvi:100261692 1292.33