LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi12g1130	ATGCGAAATCATCTTTCCCAAAACTTGGTCATGAAAAACATAGTGAGTAGGGATGACTCTAAAGTTTATATCTTCCTTGAGCTTGTGACAAAAGGTTCACTTTTAAGTCTTTATCAAAAGTATCATTTGCGAGAAAGCCAAGCCTCGGCCTACATAAGGCAGATTTTAAATGGTTTGAAATATCTACATGAGCAAAATGTAGTTCACAGGGATATCAAATGTGCTAATATATTGGTGGATGTAAATGGATCTATGAAAATTGCAGATTTTGGATTGGCAAAGGCACCCAAATTTAATGTTGTAAAATCTTGTAAAGGGACACCATTCTGGATGGAGCCAGAGTATCTTGAAGGGTTAAGGGTCATTGATCTAAGTTACTCAAGGGAGCTCATTCAAATGTTAGAATTCTCAAGCATGCCAAATTTGGAGAGACTAATTCTTCAAGGTTGTTTAAGCTTGATCGATATTCACCCATCTGTTGGAAATATGAAGAAGCTTACTACCTTAAGTTTGAGAGGGTGTGATAACCTTAAGGATCTGCCAGATAGCATTGGAGACTTGGAATCTCTTGAGATTCTTGATCTCACAGATTGCTCAAGGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGCTTAAAGGAGCTTTTTTTAAGGAATACTGCTATTAAGGATCTGCCTAATAGCATTGGAAACTTGGAATCTCTTAAGATTCTTTATCTCACAGATTGCTCAAAGTTTGATAAATTTCCGGAGAAAGGAGGGAATATGAAAAGTTTAAAGGAGCTTTCTTTAATTAATACTGCTATTAAGGATCTGCCTGATAGCATTGGAGACTTGGAATCTCTTGAGACTCTTGATCTCTCTGATTGCTCAAAGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGTTTAAAGGAGCTTTTTTTAATTAAAACTGCTATTAAGGATCTGCCTAATAGCATTGGAGACTTGGGATCTCTTGAGGTTCTTGATCTCTCTTATTACTCAAGGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGTTTAGAGGTGCTTATTTTAAAGAATTCTGCTATTAAGGATCTGCCTGATAGCATTGGAGACTTGGAATCTCTTGAGACTCTTGATCTCTCTGATTGCTCAAGGTTTGAGAAATTTCCGGAGAAGGGAGGGAATATGAAAAGTTTAGAGAATCTTTTTTTAATTAATACTGCTATTAAGGATCTGCCTGATAGCATTGGAGACTTGGAATCTCTTGAGATTCTTGATCTCTCTGATTGCTCAAAGTTTGAGAAATTTCCGGAGATGAAGAGAGGCATGAAACATCTGTACAAACTTAATCTAAGACGTACTACAATTGAAGAGTTGACCTCCTCAATAGATAATCTCAGTGGGCTTCGGAACTTAATTATAGCAGAGTGCAAAAGCTTGAGGAGTCTTCCCGACAACATTTCTAGGTTGAAATTTCTTGAAACACTCATCCTTAGTGGCTGCTCAGACCTGTGGGAAGGATTAATAAGCAATCAACTTTGCAACCTGGGAAAACTTAATATCAGTCAATGCAAAATGGCTGGACAGATTCTGGAGCTTCCTTCAAGTCTAGAAGAAATAGACGCACACGATTGCAGAAGCAAGGAAGATTTATCAAGTCTGCTCTGGATTTGTCACCTCAACTGGTTGAAATCCACGACAGAGGAGTTGAAATGCTGGAAACTCAGAGCTATTATTCCAGAAAATAGTGGAAATCCAGAGTGGATAAGGTATCAGAACTTGGGAACTGAAGTAACAACGGAGCTTCCAACGAATTGGTATGAAGATCCTGACTTCCTAGGATTTGTTGTATCATGTGTTTGTCGGTCTATTCCTACATCTGACGGCCACAGTTATTTTCTCGGTTGTGCATTAAAGTTACATGGTAATGGATTTGAATTCAAAGATAAATGCTTGTTTGACTGCCAGTGCAAGTGCCATGGTATTAATGATTTGGTAGATCAAGTATGGGTTTGGTGGTATCCTAAGATTGCTATTCCGAAAGAGCATCACCATAAATACACACATATTAATGCTTCATTTAGGGGTAAGTGGACAGAGATAAAAAAATGCGGCATCAATCTTATATTTGCGGGAGATCAACAAAATCATATGCCCATGTTGGAGCATCCTCAGAATTCTGGTGACGATGGATCAGCATTACAAGATACCGATGGTAATGTTCATGGGGCTAATCAAGATGATGAACACTACAATATTCCCATGTTGTTAGATCTTCCTGGGAATTTTGGTGACATTGGATCAGTAATACTTGAAGGCACTGATGGAAACCGTAAGAGAAGACGTGATGATTCCTTACCCGATGTAGTGGAGGAGCCACATTATAAAAGATTGGGAGCACCCAACACCCACCTCTCGCTTTGA	2433	0.3872	MRNHLSQNLVMKNIVSRDDSKVYIFLELVTKGSLLSLYQKYHLRESQASAYIRQILNGLKYLHEQNVVHRDIKCANILVDVNGSMKIADFGLAKAPKFNVVKSCKGTPFWMEPEYLEGLRVIDLSYSRELIQMLEFSSMPNLERLILQGCLSLIDIHPSVGNMKKLTTLSLRGCDNLKDLPDSIGDLESLEILDLTDCSRFEKFPEKGGNMKSLKELFLRNTAIKDLPNSIGNLESLKILYLTDCSKFDKFPEKGGNMKSLKELSLINTAIKDLPDSIGDLESLETLDLSDCSKFEKFPEKGGNMKSLKELFLIKTAIKDLPNSIGDLGSLEVLDLSYYSRFEKFPEKGGNMKSLEVLILKNSAIKDLPDSIGDLESLETLDLSDCSRFEKFPEKGGNMKSLENLFLINTAIKDLPDSIGDLESLEILDLSDCSKFEKFPEMKRGMKHLYKLNLRRTTIEELTSSIDNLSGLRNLIIAECKSLRSLPDNISRLKFLETLILSGCSDLWEGLISNQLCNLGKLNISQCKMAGQILELPSSLEEIDAHDCRSKEDLSSLLWICHLNWLKSTTEELKCWKLRAIIPENSGNPEWIRYQNLGTEVTTELPTNWYEDPDFLGFVVSCVCRSIPTSDGHSYFLGCALKLHGNGFEFKDKCLFDCQCKCHGINDLVDQVWVWWYPKIAIPKEHHHKYTHINASFRGKWTEIKKCGINLIFAGDQQNHMPMLEHPQNSGDDGSALQDTDGNVHGANQDDEHYNIPMLLDLPGNFGDIGSVILEGTDGNRKRRRDDSLPDVVEEPHYKRLGAPNTHLSL*	811

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi12g1130	810	Pfam	C-JID domain	589	716	IPR045344	-
	Vvi12g1130	810	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57	272	381	-	-
	Vvi12g1130	810	SUPERFAMILY	Protein kinase-like (PK-like)	16	121	IPR011009	-
	Vvi12g1130	810	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	67	79	IPR008271	GO:0004672\|GO:0006468
	Vvi12g1130	810	Gene3D	Ribonuclease Inhibitor	121	247	IPR032675	-
	Vvi12g1130	810	Gene3D	Ribonuclease Inhibitor	248	441	IPR032675	-
	Vvi12g1130	810	SUPERFAMILY	RNI-like	116	339	-	-
	Vvi12g1130	810	Pfam	Protein kinase domain	7	118	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi12g1130	810	SMART	LRR_typ_2	258	281	IPR003591	-
	Vvi12g1130	810	SMART	LRR_typ_2	211	234	IPR003591	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi12g1130	Vvi-Chr12	16375557	16414604	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi12g1130	7	116	MAP Kinase Kinase Kinase	AT4G08500	66.364	2.10e-42	162

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Vvi12g1130		Pkinase	1.5e-28	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi12g1130	-		-	vvi:100261692	1292.33

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