Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1116 ATGTCAGCGCCGGCCATGGCTGGATCGGTAAGCACCAGAAGCACCCTGGTGGCCGCGGAAATGCTGAAGGTATGCATCAGCACCGCATCCTTTTTTGACAAGCACCACCCTGGCAACTTCAGGAAAGTCGGAATGAGGCACTTCCACAAGCTCCGCATCAAGCTCCACTGTCCTATCATCCACATCGACAAGCTGTGGTCCATGGTGCCGCCGGCAGCAGGAGCTCCCTCTAAGGGTGATTTCCAGGCGGAGAGGCAAGCAATGGAGGAGATGAAGTTTTGGGCTTGGTGGAGATGGAGCCCAAAGCCTTTTTTCTTAATGATGGACTTGGGCTTATGA 339 0.5457 MSAPAMAGSVSTRSTLVAAEMLKVCISTASFFDKHHPGNFRKVGMRHFHKLRIKLHCPIIHIDKLWSMVPPAAGAPSKGDFQAERQAMEEMKFWAWWRWSPKPFFLMMDLGL* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1116 112 Gene3D - 45 83 - -
Vvi12g1116 112 SUPERFAMILY Ribosomal proteins L15p and L18e 29 71 IPR036227 -
Vvi12g1116 112 FunFam - 45 93 - -
Vvi12g1116 112 PANTHER 60S RIBOSOMAL PROTEIN L27A 31 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1116 Vvi-Chr12 15966450 15966788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1116 31 80 Cytoplasmic Ribosomal Protein Gene Family AT1G23290 62.000 1.64e-16 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1116 K02900 - psom:113318384 76.6405