Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1115 ATGGCCGGATCGGCAAGCACCAGAAGCACCCTGGTGGCCGCGGAAATGTTGAAGGTATGCATCACCACCGCATCCTTTTTCGACAAGCACCACCCTGGCAACTTCGGGAAAGTCGGAATGAGGCACTTCCACAAGCTCCGCATCAAGCTCCACTGTCCTATCGTCCACATCGACAAGTTGTGGTCCATGGTGCCGCCGGCAGCAGGAACTCCCTCTGAGGGCGATTTCCAGGCGGAGAGGCAAGCAACGGAGGAGATGAAGTTTTGGGCTTGGTGGAGATGGAGCCCAGAGCCTTTTTTCTTAATGATGGACTTGGGCTTATGA 324 0.5556 MAGSASTRSTLVAAEMLKVCITTASFFDKHHPGNFGKVGMRHFHKLRIKLHCPIVHIDKLWSMVPPAAGTPSEGDFQAERQATEEMKFWAWWRWSPEPFFLMMDLGL* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1115 107 PANTHER 60S RIBOSOMAL PROTEIN L27A 26 76 - -
Vvi12g1115 107 Gene3D - 40 74 - -
Vvi12g1115 107 FunFam - 40 88 - -
Vvi12g1115 107 SUPERFAMILY Ribosomal proteins L15p and L18e 25 66 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1115 Vvi-Chr12 15935675 15935998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1115 26 75 Cytoplasmic Ribosomal Protein Gene Family AT1G23290 64.000 1.51e-17 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1115 K02900 - ppp:112283475 79.3369