Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1103 ATGCATGATTTGATACAACAGATGTGTTGGAAAATTGTTCGTGAAAATTTTCCTAAAGAGCCGGACAAATGGAGCAGATTGTGGGATCCCCATGATATTGAACGTGCACTTACAACATCTGAGGGAATAAAAGGAGTCGAAACAATAGACTTGGACTTGTCTAAGTTAAAAAGAGTACGCTTCAATTCAAATGTTTTCTCAAAGATGACTAGCCTTCGATTGCTCAGAGTTCATTCAAATGACTATTTCTATCCTTATTCTTATGATAATATGGAGGAGGAGAAGGTAGATCGTTATTGTGAAGAAATGATTGATTCTGTAATGAAAACTGCTTCTAAAATGCATCTTGACCCAGATTTTGAAATCCCTTCTTATGAGTTAAGGTATCTTTGTTGGGATGGGTATCCTTTAGATTTTTTACCATCAAATTTTGATGGAGAGAACCTTGTTGAACTTCACTTAAAGTGTAGCAACATAAAACAACTATGGCAAGGGAAGAAGGATCTTGAAAGTTTAAAGGTCATTGATCTAAGTCACTCAAACAAGCTCGTTCAAATGCCAGAATTCTCAAGCATGCCAAATTTGGAAGAACTAATTCTTAAAGGTTGTGTAAGCTTGATCGATATTCACCCATCTGTTGGAGTTCTCAAGAAGTTTACTACCTTAAATTTGACGAGTTGTGTTAAGCTTAAGGGTTTACCAAGTAGCATTAGCAACTTGGAAGCTCTTGAATGTCTCTATCTTACTAGGTGCTCAAGCTTTGACAAGTTTTCAGAAATTCAAGGAAATATGAAAAGTTTAAAGTTTCTATATTTGCGCAAGACTGCTATTAGAGAACTTCCAAGTAGCATTGACTTAGAATCTGTTGAGATTCTTGATCTCTCTGATTGTTCCAAGTTTGAGAAATTTCCAGAGAATGGAGCAAACATGAAAAGTTTATATGATCTTAGTTTAGAGAATACTGTTATTAAAGAACTCCCAACAGGTATTGCCAACTGGGAATCTCTTCAAACTCTTGATCTCTCTAGTTGCTTAAAGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGTTTAAAGAAGCTTTGTTTTAATGGTACTGCTATTAAGGATCTGCCGGATAGCATTGGAGACTTGGAATCTCTTAAGATTCTTGATCTCTCTTATTGCTCAAAGTTTGAGAAATTTCCAGAGAAGGGAGGGAACATGAAAAGTTTATGGAAGCTTAATTTAAAAAATACTGCTATTAAGGATCTGCCGGATAGCATTGGAGACTTGGAATCTCTTGTGAGTCTTGATCTCTCTAAGTGCTCAAAGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGTTTAAAGCGACTTTATTTAAACAATACTGCTATTAAGGATCTGCCAGATAGCATTGGAGACTTGGAATCTCTTGAGATTCTTGATCTCTCTAAGTGCTCAAAGTTTGAGAAATTTCCAAAGAAGGGAGGGAACATGAAAAGTTTAAAGAGACTTTATGTAAAAAATACTGCTATTAAGGATCTACCGGATAGCATTGGAGACTTGGAATCTCTTAAGATTCTTGATCTCTCTTATTGCTCAAAGTTTGAGAAATTTCCGGAGAAGGGAGGGAACATGAAAAGTTTAAAGCAGCTTTATTTAATAAATACTGCTATTAAGGATCTGCCAGATAGCATTGGAGACTTGGAAGCCAATATTTACATAATAATTTGTGCAGGAGTTGAAAAGTTGGAAACTCAGTGCTTGTATTCCAGAAAGTAG 1779 0.3592 MHDLIQQMCWKIVRENFPKEPDKWSRLWDPHDIERALTTSEGIKGVETIDLDLSKLKRVRFNSNVFSKMTSLRLLRVHSNDYFYPYSYDNMEEEKVDRYCEEMIDSVMKTASKMHLDPDFEIPSYELRYLCWDGYPLDFLPSNFDGENLVELHLKCSNIKQLWQGKKDLESLKVIDLSHSNKLVQMPEFSSMPNLEELILKGCVSLIDIHPSVGVLKKFTTLNLTSCVKLKGLPSSISNLEALECLYLTRCSSFDKFSEIQGNMKSLKFLYLRKTAIRELPSSIDLESVEILDLSDCSKFEKFPENGANMKSLYDLSLENTVIKELPTGIANWESLQTLDLSSCLKFEKFPEKGGNMKSLKKLCFNGTAIKDLPDSIGDLESLKILDLSYCSKFEKFPEKGGNMKSLWKLNLKNTAIKDLPDSIGDLESLVSLDLSKCSKFEKFPEKGGNMKSLKRLYLNNTAIKDLPDSIGDLESLEILDLSKCSKFEKFPKKGGNMKSLKRLYVKNTAIKDLPDSIGDLESLKILDLSYCSKFEKFPEKGGNMKSLKQLYLINTAIKDLPDSIGDLEANIYIIICAGVEKLETQCLYSRK* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1103 592 Gene3D Ribonuclease Inhibitor 257 396 IPR032675 -
Vvi12g1103 592 Gene3D Ribonuclease Inhibitor 38 256 IPR032675 -
Vvi12g1103 592 SMART LRR_typ_2 169 193 IPR003591 -
Vvi12g1103 592 SMART LRR_typ_2 404 427 IPR003591 -
Vvi12g1103 592 SMART LRR_typ_2 264 287 IPR003591 -
Vvi12g1103 592 SMART LRR_typ_2 310 333 IPR003591 -
Vvi12g1103 592 SMART LRR_typ_2 357 380 IPR003591 -
Vvi12g1103 592 SMART LRR_typ_2 451 474 IPR003591 -
Vvi12g1103 592 SMART LRR_typ_2 545 568 IPR003591 -
Vvi12g1103 592 SMART LRR_typ_2 498 521 IPR003591 -
Vvi12g1103 592 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 380 480 - -
Vvi12g1103 592 SUPERFAMILY L domain-like 123 438 - -
Vvi12g1103 592 Gene3D Ribonuclease Inhibitor 397 587 IPR032675 -
Vvi12g1103 592 Pfam Leucine Rich Repeat 148 167 IPR011713 -
Vvi12g1103 592 SUPERFAMILY L domain-like 394 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1103 Vvi-Chr12 15750586 15756342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1103 380 570 WRKY Transcription Factor Family AT4G12020 33.803 1.71e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1103 - - vvi:104881011 965.681