Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1100 ATGAAAAAGGGGTTCCAAAGACATGCCTTTGAGATGCTGGGTGGTGGAATCAATGCCGTGGCTTCTGGCTACCCCAAGCTTGCTGGGCTCGGCGCTGAGATAGTTGGCACTGTCATTCTTGTCTACCCCGTTCTCTCTGCAACTGATGCCAAGAGCAATGTTAGAGACTCACATGTTTCAAATTTGGCTCCTCTCTCAATCGAGTTTGCAGTGCTCTTGGTTCATCCGGCAACCATCCCCATCACCGGAACCGGCATCAATCCTGCTAGGAGTCTCGGGCCGCCATCATCTACAACAAGGGAAATGCCTGGAATGATATGTGGATTTCCTTGGTTGGACCCTTCATTGGAGTTACTCTAG 360 0.5056 MKKGFQRHAFEMLGGGINAVASGYPKLAGLGAEIVGTVILVYPVLSATDAKSNVRDSHVSNLAPLSIEFAVLLVHPATIPITGTGINPARSLGPPSSTTREMPGMICGFPWLDPSLELL* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1100 119 PRINTS Major intrinsic protein family signature 32 50 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi12g1100 119 PRINTS Major intrinsic protein family signature 68 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi12g1100 119 Gene3D Glycerol uptake facilitator protein. 2 111 IPR023271 -
Vvi12g1100 119 SUPERFAMILY Aquaporin-like 10 98 IPR023271 -
Vvi12g1100 119 Pfam Major intrinsic protein 11 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi12g1100 119 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 94 IPR034294 -
Vvi12g1100 119 FunFam Putative aquaporin PIP-type 7a 2 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1100 Vvi-Chr12 15719976 15720335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1100 3 93 Major Intrinsic Protein MIP AT3G61430 72.527 4.48e-38 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1100 K09872 - vvi:100265390 146.362