Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1099 ATGAAGTATGTTTGGATTGAAGAGAGCCCTAATACGGCTTCAGATTGCGGCGTGGCACCACCAAAAAAGGGGGACGACCTCAGATCGCGATGTGGTACCACCAGAAAGGTAGAAGAACACTTCCCAAGACACGTGCAGGGATTGGGGTGGAGAAAAAGTAGCCGGAGCTTCGCCGGAAAGACTGTTTGGAGGGCCGACGGAGACAAAAATCCCCAAAAGAGGTACGTGCAGGGCTCGGATGGGAGAACCAGGGATGTAGGGAGGCTGGTCGGCGTCAGGCTAAGCTGGAGGAGGAGGCGTGTCGCCGGAAAAGGCCTCACGCGCCCTCACGCGCCGGCGCGTGAGATTCAATCGCCGGCCGTAAAAGTGCGCGTGGCCGGCGCGTGGACTCTTTTCTGGCTTCGTTGCTTTGGGAAAAGTTGGAGATCTCCTCTAGGCGCTCCTTTTGGTGTGGTCGGTGTCGGAAAAAGATGTCGCCGGAAAGTTCGTCGGAAAGTTCGCCGGCGTGATGGATTCTTTTTTGCTGTGAAGGAGGTTTCATTGCTTGATCAAGGGAGCCAGGGCAAACAAAGCATTTATCAACTTGAACAGGAGATTTCTCTTTTAAGTCAGTTTGAACATGAGAACATAGTTCGGTATTATGGCACAGACAAGGATGACTCTAAACTTTATATCTTCCTTGAGCTTGTGACGAAAGGTTCACTTTTAAGTCTTTATCAAAAGTATGATTTGCGGGAAAGCCAAGCCTCGGCCTACACAAGGCAGATTTTAAATGGTTTGAAATATCTACATGAGCAAAATGTAGTTCACAGGGATATCAAATGTGCTAATATATTGGTGGATGTAAATGGCTCTGTGAAACTTGCGGATTTTGGATTGGCAAAGGCAACCAAATTGAATGATGTAAAATCTTGTAAAGGGACAGTATTCTGGATGGCCCCAGAGGTCGTTAACCGGAAGAATAAGGGCTATGGGCTTGCAGCTGATATATGGAGCCTTGGATGCACTGTGTTAGAGATATTGACTCGTCGACCCCCATATTCCCACTTGGAAGGCATGCAAGCGTTATTTAGGATTGGCAAGGGTGAACCTCCTCCTGTTTCTAATTCCTTGTCATCAGATGCCCGAAATTTTATCCTCAAATGCTTGCAAGTCAACCCTAGTGATCGGCCTACTGCTGGTCAGTTACTGGACCATCCATTTGTGAAAAGGCCACTGCACACTTTCTCTGGCCCTCAATCTCCTCGTATGAATGGAATACGACCTTAA 1269 0.4831 MKYVWIEESPNTASDCGVAPPKKGDDLRSRCGTTRKVEEHFPRHVQGLGWRKSSRSFAGKTVWRADGDKNPQKRYVQGSDGRTRDVGRLVGVRLSWRRRRVAGKGLTRPHAPAREIQSPAVKVRVAGAWTLFWLRCFGKSWRSPLGAPFGVVGVGKRCRRKVRRKVRRRDGFFFAVKEVSLLDQGSQGKQSIYQLEQEISLLSQFEHENIVRYYGTDKDDSKLYIFLELVTKGSLLSLYQKYDLRESQASAYTRQILNGLKYLHEQNVVHRDIKCANILVDVNGSVKLADFGLAKATKLNDVKSCKGTVFWMAPEVVNRKNKGYGLAADIWSLGCTVLEILTRRPPYSHLEGMQALFRIGKGEPPPVSNSLSSDARNFILKCLQVNPSDRPTAGQLLDHPFVKRPLHTFSGPQSPRMNGIRP* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1099 422 SUPERFAMILY Protein kinase-like (PK-like) 161 409 IPR011009 -
Vvi12g1099 422 Pfam Protein kinase domain 161 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1099 422 ProSiteProfiles Protein kinase domain profile. 146 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1099 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Vvi12g1099 422 Gene3D Transferase(Phosphotransferase) domain 1 151 416 - -
Vvi12g1099 422 SMART serkin_6 146 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1099 422 FunFam Mitogen-activated protein kinase 1, putative, expressed 150 414 - -
Vvi12g1099 422 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 169 408 - -
Vvi12g1099 422 PRINTS Tyrosine kinase catalytic domain signature 371 393 IPR001245 GO:0004672|GO:0006468
Vvi12g1099 422 PRINTS Tyrosine kinase catalytic domain signature 227 240 IPR001245 GO:0004672|GO:0006468
Vvi12g1099 422 PRINTS Tyrosine kinase catalytic domain signature 262 280 IPR001245 GO:0004672|GO:0006468
Vvi12g1099 422 PRINTS Tyrosine kinase catalytic domain signature 328 350 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1099 Vvi-Chr12 15672803 15716372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1099 170 406 MAP Kinase Kinase Kinase AT4G08500 72.269 7.42e-118 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi12g1099 Pkinase 1.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1099 - K13414 vvi:100241228 512.301