Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1087 ATGAAGGAATTCAGCCATGTATCAACTGCATTATTCAGAAATATCAAAAAGCATTTCTCTGTTCTCTTTTTGTGCCTTGACAATATCTACAGAAGCCTAGCTACTGAGGGTGACTACACTGATGTTGTCAAGAAGAGAGGCTTGGATTCCAAGTTCAAAATTGATTTTATTGGCACCATAAATTATTATGAAGGCCCTAATATCTCCAATAAGGTTAAGACATGTATAATGACAAGGCTCATCACTTTAGACCCTTAA 258 0.3605 MKEFSHVSTALFRNIKKHFSVLFLCLDNIYRSLATEGDYTDVVKKRGLDSKFKIDFIGTINYYEGPNISNKVKTCIMTRLITLDP* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1087 85 SUPERFAMILY Phosphotyrosine protein phosphatases I 19 74 IPR036196 -
Vvi12g1087 85 Gene3D - 15 84 - -
Vvi12g1087 85 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 4 83 - -
Vvi12g1087 85 Pfam Low molecular weight phosphotyrosine protein phosphatase 21 77 IPR023485 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1087 Vvi-Chr12 15519499 15523327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1087 17 83 Protein tyrosine phosphatase (PTP) family AT3G44620 52.239 3.25e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1087 K25307 K01104 sly:101252251 77.0257