Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1086 ATGATTGAGAAAACTATTGAGAGGAGACAGAAGAGGATGATCAAGAATTGGGAATCTGCTACCCATTCAAGGGCCAGGAAGCAGGCTTACACAAATGAACTGGAGAACAAAGTTTCACGTCTGGAAGAGGAAAATGAAAGGCTAAGGAAACGAAAGGTACGCTCTCTATCTTCCCATTTTAAGTGTATATATATAGGTTGCAAAGGAAATTTGTTTGCTAAAAGAAGAGAAATCATTATGTTAAAGAAGACGAAGTCAAAAACCATGAAGATTACATCAGTGAACTCATTAGGAGGTTGA 300 0.3767 MIEKTIERRQKRMIKNWESATHSRARKQAYTNELENKVSRLEEENERLRKRKVRSLSSHFKCIYIGCKGNLFAKRREIIMLKKTKSKTMKITSVNSLGG* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1086 99 SMART brlzneu 4 62 IPR004827 GO:0003700|GO:0006355
Vvi12g1086 99 Pfam bZIP transcription factor 8 51 IPR004827 GO:0003700|GO:0006355
Vvi12g1086 99 Coils Coil 24 58 - -
Vvi12g1086 99 Gene3D - 6 61 - -
Vvi12g1086 99 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 6 60 - -
Vvi12g1086 99 SUPERFAMILY Leucine zipper domain 8 51 IPR046347 GO:0003700|GO:0006355
Vvi12g1086 99 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 2 68 IPR043452 GO:0003700|GO:0045893
Vvi12g1086 99 CDD bZIP_plant_BZIP46 8 50 - -
Vvi12g1086 99 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 6 51 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1086 Vvi-Chr12 15486079 15491009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1086 1 54 bZIP Transcription Factor Family AT2G41070 77.778 3.05e-21 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi12g1086 bZIP_1 6.2e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1086 K14432 - pop:18102797 83.9593