Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1072 ATGAACAATTTAAGTGGTACAATTCCGGACACATTGGGCAAGCTTACAAAACTACGTTTCCTGCGGCTTAACAACAATTCCTTGACAGGAACTATTCCAATGTCTTTAACTACTGTTATGACACTGCAAGTCCTGGATCTGTCGAACAATCACCTAAGAGGAGATATACCAGTTAACGGCTCATTTTCATTATTTTATTCTATCAGTTTTAACAATAATGACCTAAACCAAATTCCAGTTTTTCCACCTCCACCAATTTCTCCAACACCAACGACTTCTTCGGGTGCCACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTTCTGCACTTCTGTTTGCTGCCCTTGGAATAGTACTTGCCTGGTGGCTACGAAGGAAACCACAGGAGCACTTTTCTGATGTACCTGCTGAAAAGGATCCAGAAGTTCATTTGGGGCAGCTTAAAAGGTTTTCCCTGCGTGAACTACAAGTTGCAACGGATAATTTTAGTAACAAAAACATTCTGGGCAGTGGTGGATTTGGTAAAGTTTACAAAGGAAGTTTAGCTGATGGTTCTCTAGTGGCAGTAAAAAGACTGAAAAAGGAGTGTATTCATGGTAGGGAACTGCAATTTCAGACAGAAGTTGAAATGATCAGCATGGCTGTGCACCGGAATCTACTTCGTCTACATGGCTTTTGCATGACACCAACAGAACGGTTGCTTGTCTATCCCTTTATGGTTAATGGAAGTGTTGCATCATGTTTGAGAGAGCGAGCTGATGGACAATCACCTCTTAATTGGCCAATAAGGAAACAAATTGCATTAGGATCAGCAAGGGGGCTTGCTTATTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTGAAGGCTGCAAGCATATTGTTGGACAACGAGTTCGAAGCAGTAGTAGGAGACTTTGGGCTGGCTAAACTGATGGACTACAAGGATACTCATGTTACCACTGCTGTATGTGGCACAATTGGGCATATTGCTCCAGAGTACCTCTCCACTGGGAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGAGTAATGCTTCTTGAGCTTATCACTGGACAGAGGGCTTTTGATCCTGCTCGGCTTGCCAATGATGATGCTGTTATGTTACTTGATTGGGGTTCCTTCACATCAGGATTCCATTAA 1170 0.4274 MNNLSGTIPDTLGKLTKLRFLRLNNNSLTGTIPMSLTTVMTLQVLDLSNNHLRGDIPVNGSFSLFYSISFNNNDLNQIPVFPPPPISPTPTTSSGATGAIAGGVAAGSALLFAALGIVLAWWLRRKPQEHFSDVPAEKDPEVHLGQLKRFSLRELQVATDNFSNKNILGSGGFGKVYKGSLADGSLVAVKRLKKECIHGRELQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMVNGSVASCLRERADGQSPLNWPIRKQIALGSARGLAYLHDHCDPKIIHRDVKAASILLDNEFEAVVGDFGLAKLMDYKDTHVTTAVCGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDPARLANDDAVMLLDWGSFTSGFH* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1072 389 SUPERFAMILY L domain-like 2 79 - -
Vvi12g1072 389 Gene3D Ribonuclease Inhibitor 1 80 IPR032675 -
Vvi12g1072 389 FunFam Somatic embryogenesis receptor kinase 1 131 238 - -
Vvi12g1072 389 FunFam Protein NSP-INTERACTING KINASE 1 239 386 - -
Vvi12g1072 389 ProSitePatterns Protein kinases ATP-binding region signature. 168 190 IPR017441 GO:0005524
Vvi12g1072 389 Gene3D Transferase(Phosphotransferase) domain 1 239 386 - -
Vvi12g1072 389 Gene3D Phosphorylase Kinase; domain 1 131 238 - -
Vvi12g1072 389 ProSiteProfiles Protein kinase domain profile. 162 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1072 389 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 369 - -
Vvi12g1072 389 Pfam Protein kinase domain 163 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1072 389 SUPERFAMILY Protein kinase-like (PK-like) 140 370 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1072 Vvi-Chr12 15236377 15245355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1072 3 57 Receptor kinase-like Gene Family AT4G33430 47.273 4.47e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vvi12g1072 Pkinase 2.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1072 K13416 - vvi:100266543 705.671