Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1067 ATGGTTGAGGAGAATGACTTGAATGAAAAAAAGACATATATGCATGAAGCCACAATATCAAGCAGGGGAGCATTTGAAACAGAGACTGTGAAAAGCTCTGGCCAGAATGGGAAACAACAAGATTTGGAGAAGATCAAGGAAGAGGGGAAGCCCAGCACAGTTCCATTTCACAAACTGTTCTCTTGTGCAGATTCTGCTGATATGTTGTTGATGATTACCGGCACAATAAGTGCTGTTGGGAATGGAATATGTATGCCTCTTATGGTAATACTTTTTGGGAACCGGATTGATTCTTTTGGACAAAACCAGAGCAACAAAGATGTGGTTGATGTAGTATCCAAGGTTTCTCTGAAATTTGTTTACTTGGCTGTGGAGGCTGGCAGAGCAGCATTCTTTCAAGCGGCTTGCTGGATGGTCACAGAGGAGAGGCAGGCTGCAAGAATTAGAAGTCTGTACTTGAAAATTATATTGAGACAAGATATTGCTTCCTTTGATAAGGAAGCAAACTCAGGAGAGGCTATCGGAAGGATATTTGGAGACACTATTCTAATACAAGATGCCATGGGTGAGAAGGTAGGGAAATTTATACAGCTGGTATCGACGTTCATTGGAGGCTTTGTCATAACATTCATTAAAGGGTGGCTTCTTACCCTTGACATGTATCATCAATTCCTCTTCTTGTGA 684 0.4152 MVEENDLNEKKTYMHEATISSRGAFETETVKSSGQNGKQQDLEKIKEEGKPSTVPFHKLFSCADSADMLLMITGTISAVGNGICMPLMVILFGNRIDSFGQNQSNKDVVDVVSKVSLKFVYLAVEAGRAAFFQAACWMVTEERQAARIRSLYLKIILRQDIASFDKEANSGEAIGRIFGDTILIQDAMGEKVGKFIQLVSTFIGGFVITFIKGWLLTLDMYHQFLFL* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1067 227 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 27 219 IPR039421 -
Vvi12g1067 227 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 72 218 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi12g1067 227 MobiDBLite consensus disorder prediction 22 39 - -
Vvi12g1067 227 Pfam ABC transporter transmembrane region 71 218 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi12g1067 227 Gene3D ABC transporter type 1, transmembrane domain 67 221 IPR036640 GO:0005524|GO:0016020
Vvi12g1067 227 SUPERFAMILY ABC transporter transmembrane region 59 218 IPR036640 GO:0005524|GO:0016020
Vvi12g1067 227 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1067 Vvi-Chr12 15166741 15167424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1067 54 218 Calmodulin-binding Proteins AT2G36910 34.940 1.92e-30 116