Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1058 ATGGACCCGGGGATCTTCGGTTCGGTTTTTGTTTCCTTGATTATAGTATTCTCTGCGTTTCTGAGGGTCTCTGGTAATTCCGAAGGTGATGCTTTGAATGCGTTGAAGTCAAATTTAGCTGATCCTAACAATGTTTTGCAAAGTTGGGATGCTACCCTTGTCAATCCTTGCACATGGTTTCATGTTACATGCAACAGTGACAATAGTGTTACAAGAGTTGATCTTGGAAATGCAAATTTATCCGGTCAACTGGTTTCACAGCTTGGTCAGCTTACAAATTTGCAATATCTGGAACTTTATAGTAATAACATAAGTGGCAAAATACCAGAGGAGCTTGGGAATTTGACAAACTTGGTGAGCTTGGATCTTTACATGAACAAGCGGCTTAACAACAACACCTTGACAGGAACTATTCCAAGATCTTTAACTACTGTTATGACACTGCAAGTCCTGGATCTTTCAAACAATCAGCTAACAGGAGATATACCAGTTGACGGCTCATTTTCATTATTTACTCCTATCAGTTTTAACAATAATAGACTAAACCCACTTCCAGTTTCTCCACCACCACCAATTTCTCCTACACTAACAGCTTCTTCAGGAAACAGTGCCACTGGAGCCATTGCTGGAGGAGTTGCTGCTGGTGCTGCACTTCTGTTTGCTGCCCCTGCAATCGTACTTGCCTGGTGGCGACGAAGGAAACCACAGGAGCACTTTTTTGATGTACCTGCTGAAGAGGATCCAGAAGTTCATTTGGGACAGCTTAAAAGGTTTTCTCTGCGTGAACTACAAGTTGCAACGGATAATTTTAGTAACAAACACATTCTGGGTAGAGGTGGATTTGGTAAAGTTTACAAAGGACGTTTAACTGATGGTTCTCTAGTGGCAGTAAAAAGACTGAAAGAGGAGCGTACTCAGGGTGGGGAACTGCAATTTCAGACAGAAGTCGAAATGATCAGCATGGCTGTGCACCGGAATCTACTTCGTCTACGTGGCTTTTGCATGACACCAACAGAACGGTTGCTTGTCTATCCCTTTATGGTTAATGGAAGTGTTGCATCATGTTTGAGAGAGCGAGCTGATGGACAGTCTCCCCTTAATTGGCCAATAAGGAAACAAATTGCTTTAGGATCAGCAAGGGGGCTTGCTTATTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTGAAGGCTGCAAACATATTGTTGGATGAAGAGTTTGAAGCAGTAGTAGGAGACTTTGGGCTGGCTAAACTCATGGACTACAAGGATACTCATGTTACCACTGCTGTACGTGGCACAATTGGGCATATTGCTCCGGAGTACCTCTCCACTGGGAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGAGTAATGCTTCTTGAGCTTATCACTGGACAGAGGGCTTTTGATCTTGCGCGGCTTGCCAATGATGATGATGTTATGTTACTTGATTGGGTAAAAGGACTACTGAAAGATAAGAAGTTGGAGACACTGGTTGATGCCGATCTGCAGGGTGATTACATTGAGGTAGAAGTAGAGGAGCTAATTCGGGTGGCTCTCCTCTGCACAGATGGTGCTGCTGCACAACGACCCAAAATGTCAGAGGTGGTCAGAATGCTTGAAGGTGATGGTTTGGCCGAGAGATGGGAACAATGGGAGAAGGATGATATCATCCGCCAAGAGTACAACCATATCCCCCACCCAGACTCTAATTGGATTGACTCCACCGCAGGCCTCCGCCCTGATGAATTGTCTGGTCCGAGATGA 1779 0.4418 MDPGIFGSVFVSLIIVFSAFLRVSGNSEGDALNALKSNLADPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKIPEELGNLTNLVSLDLYMNKRLNNNTLTGTIPRSLTTVMTLQVLDLSNNQLTGDIPVDGSFSLFTPISFNNNRLNPLPVSPPPPISPTLTASSGNSATGAIAGGVAAGAALLFAAPAIVLAWWRRRKPQEHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERADGQSPLNWPIRKQIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLQGDYIEVEVEELIRVALLCTDGAAAQRPKMSEVVRMLEGDGLAERWEQWEKDDIIRQEYNHIPHPDSNWIDSTAGLRPDELSGPR* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1058 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 393 405 IPR008271 GO:0004672|GO:0006468
Vvi12g1058 592 SUPERFAMILY L domain-like 27 185 - -
Vvi12g1058 592 FunFam Somatic embryogenesis receptor-like kinase 1 347 564 - -
Vvi12g1058 592 FunFam Somatic embryogenesis receptor kinase 1 239 346 - -
Vvi12g1058 592 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 555 - -
Vvi12g1058 592 FunFam Somatic embryogenesis receptor kinase 1 24 191 - -
Vvi12g1058 592 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524
Vvi12g1058 592 Pfam Leucine Rich Repeat 148 163 IPR001611 GO:0005515
Vvi12g1058 592 Gene3D Transferase(Phosphotransferase) domain 1 347 564 - -
Vvi12g1058 592 ProSiteProfiles Leucine-rich repeat profile. 147 169 IPR001611 GO:0005515
Vvi12g1058 592 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vvi12g1058 592 SUPERFAMILY Protein kinase-like (PK-like) 249 545 IPR011009 -
Vvi12g1058 592 Gene3D Phosphorylase Kinase; domain 1 239 346 - -
Vvi12g1058 592 ProSiteProfiles Protein kinase domain profile. 270 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1058 592 SMART serkin_6 270 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1058 592 Gene3D Ribonuclease Inhibitor 129 185 IPR032675 -
Vvi12g1058 592 Gene3D Ribonuclease Inhibitor 24 128 IPR032675 -
Vvi12g1058 592 MobiDBLite consensus disorder prediction 573 592 - -
Vvi12g1058 592 Pfam Protein kinase domain 271 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1058 Vvi-Chr12 14935302 14962284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1058 1 592 Receptor kinase-like Gene Family AT4G33430 73.112 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vvi12g1058 Pkinase 4.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1058 K13416 - vvi:100253855 1106.66