LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi12g1057	ATGGAGGCAATCTTTCTCTGCTTAATTTCTCTGGTTTTGAGGGTTTCCGGTATTTCTGAAGGTGATGCCTTGTATGCACTAAAGTCAAGTTTAGTCGACCCTAAAGATGTTTTACAAAGTTGGGATACTAGCAGTGGTAATCCTTGCATATGGTTTCACGTTACGTGCAATGGTGATGGTAATGTTATAAGAGTTGATCTTGGAAATGGAAGTTTATCTGGTCAATTGGATTCAAGAGTTGGTCAGCTTACAAAATTAGAATATTTGGGACTTTATAATAATAACATAAGTGGAAAAATACCGGAGGAGCTTGGGAATTTGGAAAACTTGATGAGCTTGGATCTTTACTTCAACAATTTAAGCGGTCCAATTCCGGGCACATTGGGCAAGCTTCGAAAACTACATTTCTTGCGGCTTAACAACAACATCTTGATGGGAACTATTCCTATGTCTTTAACTGCTGTATCATCACTGGAAATCCTGGATCTATCGAACAACAAACTAACAGGAGATATACCAGTCAATGGCTCCTTTTCATTATTTACTCCCATCAGTTTTGGTAATAATCGTCTAAGTAATAATTCTCCAAAAAGAACGCTCGATTCTCCATCTCCGATTTCTCCAAATCCATTGACTCCACCGACTCCTTCAGGAAACAGTGCCATTGGTGTCATTGCTGGATTTATTGCTCTTGGTGTGTTCATTGCCTCTGCAATTGTTTTTGTTTGTTGGCGACTAAGGAGACCACGGGCGCACTTTTTTGATGTACCTGCTGAGGAAGATCCATTAGTTCATTTGGGACAGCTCAGAAGGTTTTCTCTTCATCAACTAAAATATGCAACAAACAATTTTAGCAATAAAGACATACTGGGTAGAGGTGGATTTGGTAAAGTTTACAAAGGACGCTTGGCTGATGGTTCTCTAGTGGCAATAAAAAGATTGAAAGAGGAGCGTACTCATGGTGGGGAACTGCAGTTTCAGACAGAATTAAGAATGATCAGCATGGCAGTGCATAGGAATCTACTTCGTCTGCAAGGCTTTTGCATGACATCGACAGAAAGGTTGCTTGTCTATCCTCTTATGGTTAATGGAAGTGTTGCATCATGTTTAAGAGAGCGGACAGATGGACAATCCCCTCTTGATTGGCCAGCAAGGAAACAAATTGCATTGGGATCTGCAAGGGGGCTTGCTTATTTGCATGATTCTTGTGACCCTAAGGTAATTCATCGTGATGTGAAGGCAGCAAACATACTGTTGGATGAAGAGTTTGAAGCAGTGGTTGCAGATTTTGGGCCGGCTAAACTCATGGACTACAATGATACTCATGTTACCACAGCTGTACATGGAACACTTGGGCATATTGCACCAGAGTACCTCTCCACTGGAAGGTCTTCAGAGAAGACTGATGTTTATGGATATGGGATCATGCTTCTTGAGCTCATCACTGGGCAGAGGGCTTTTGATCTTGCTCGGTTAGCCGGTAATGAGGACGTTATGTTACTCAGTTGGGTTAAGGAACTGTTGAACAACAAGAAGTTGGAAACACTGGTTGATTCCAAGCTGCAGGGCAATTACATTGTGGAGGAGGTAGAGGAGCTAATCCAGGTGGCTCTCCTTTGCACACTAGATGCAGCTTCAGACCGACCCAAGATGTCAGATGTGGTTAAAATGCTTGAAGGTGATGGTTTAGCTGAAAGGTGGGAACAGTGGCAAAAGAAGGATATAATTTGCGGAGAGCAAAATCATAGCAACTTCCCCTCTAATAATTGGATTATAAATGACTCCACTCCAGGCCTTCGTCCTGAAGAATTGTCCGGTCCCAGATGA	1827	0.4215	MEAIFLCLISLVLRVSGISEGDALYALKSSLVDPKDVLQSWDTSSGNPCIWFHVTCNGDGNVIRVDLGNGSLSGQLDSRVGQLTKLEYLGLYNNNISGKIPEELGNLENLMSLDLYFNNLSGPIPGTLGKLRKLHFLRLNNNILMGTIPMSLTAVSSLEILDLSNNKLTGDIPVNGSFSLFTPISFGNNRLSNNSPKRTLDSPSPISPNPLTPPTPSGNSAIGVIAGFIALGVFIASAIVFVCWRLRRPRAHFFDVPAEEDPLVHLGQLRRFSLHQLKYATNNFSNKDILGRGGFGKVYKGRLADGSLVAIKRLKEERTHGGELQFQTELRMISMAVHRNLLRLQGFCMTSTERLLVYPLMVNGSVASCLRERTDGQSPLDWPARKQIALGSARGLAYLHDSCDPKVIHRDVKAANILLDEEFEAVVADFGPAKLMDYNDTHVTTAVHGTLGHIAPEYLSTGRSSEKTDVYGYGIMLLELITGQRAFDLARLAGNEDVMLLSWVKELLNNKKLETLVDSKLQGNYIVEEVEELIQVALLCTLDAASDRPKMSDVVKMLEGDGLAERWEQWQKKDIICGEQNHSNFPSNNWIINDSTPGLRPEELSGPR*	609

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi12g1057	608	Gene3D	Phosphorylase Kinase; domain 1	253	359	-	-
	Vvi12g1057	608	Gene3D	Transferase(Phosphotransferase) domain 1	361	578	-	-
	Vvi12g1057	608	SMART	serkin_6	284	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi12g1057	608	FunFam	Somatic embryogenesis receptor kinase 1	253	360	-	-
	Vvi12g1057	608	Pfam	Protein kinase domain	285	554	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi12g1057	608	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	6	569	-	-
	Vvi12g1057	608	Pfam	Leucine rich repeat N-terminal domain	19	57	IPR013210	-
	Vvi12g1057	608	FunFam	Somatic embryogenesis receptor-like kinase 1	361	577	-	-
	Vvi12g1057	608	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	407	419	IPR008271	GO:0004672\|GO:0006468
	Vvi12g1057	608	SUPERFAMILY	Protein kinase-like (PK-like)	262	559	IPR011009	-
	Vvi12g1057	608	Gene3D	Ribonuclease Inhibitor	17	199	IPR032675	-
	Vvi12g1057	608	ProSiteProfiles	Protein kinase domain profile.	284	568	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi12g1057	608	ProSitePatterns	Protein kinases ATP-binding region signature.	290	312	IPR017441	GO:0005524
	Vvi12g1057	608	SUPERFAMILY	L domain-like	19	196	-	-
	Vvi12g1057	608	MobiDBLite	consensus disorder prediction	588	608	-	-
	Vvi12g1057	608	ProSiteProfiles	Leucine-rich repeat profile.	157	179	IPR001611	GO:0005515
	Vvi12g1057	608	MobiDBLite	consensus disorder prediction	192	214	-	-
	Vvi12g1057	608	FunFam	Somatic embryogenesis receptor kinase 1	16	204	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi12g1057	Vvi-Chr12	14887791	14898196	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi12g1057	5	608	Receptor kinase-like Gene Family	AT4G33430	63.182	0.0	802

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Vvi12g1057		Pkinase	9.1e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi12g1057	K13416		-	vvi:100243623	1191.02