Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1056 ATGGATATTTCTCTGACCTCACGCCTCAACACTGTAAAACCACCCATTATTCGTCGTCCACTCGCCGATAACCATCGAAGGTTTGTCTCGGTTTCATGCAGTGCAAGATCAGCAGCCAGGTTGGCCTGCGGAAATGAGAGTCCCAACTACTACAAGCTGCTTCATTTGAGTCCTGATAATGCAGGCGTTGATGAGATAAAGAGAGCTTACAGAAGGATGAGTCTACAATATCACCCTGATGTTTGTGATCCTTCCATGAAGGAAGAATCAACAAGGATGTTTGTTCAGCTGAATGCAGCTTACAAGACCCTCTCTGATCCCGTTCTGCGAATGCACTATGATTATGACTTGGGTTTGATCGATTTTAGGCAACCATTGAGGACGGACACTACAACGAAGATATGGGAAAATCAAATTACAGGGTTGAAGAGAAGGTCCGACTACAGAATGGCTCAACAGGGGATAACATGGGGAAGTAGAATGAGGGCTCGGAATATTCAGAAATGA 507 0.4497 MDISLTSRLNTVKPPIIRRPLADNHRRFVSVSCSARSAARLACGNESPNYYKLLHLSPDNAGVDEIKRAYRRMSLQYHPDVCDPSMKEESTRMFVQLNAAYKTLSDPVLRMHYDYDLGLIDFRQPLRTDTTTKIWENQITGLKRRSDYRMAQQGITWGSRMRARNIQK* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1056 168 CDD DnaJ 49 106 IPR001623 -
Vvi12g1056 168 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 31 165 - -
Vvi12g1056 168 SMART dnaj_3 48 109 IPR001623 -
Vvi12g1056 168 PRINTS DnaJ domain signature 89 109 IPR001623 -
Vvi12g1056 168 PRINTS DnaJ domain signature 52 70 IPR001623 -
Vvi12g1056 168 PRINTS DnaJ domain signature 70 85 IPR001623 -
Vvi12g1056 168 ProSiteProfiles dnaJ domain profile. 49 117 IPR001623 -
Vvi12g1056 168 SUPERFAMILY Chaperone J-domain 45 117 IPR036869 -
Vvi12g1056 168 Gene3D DnaJ domain 36 136 IPR036869 -
Vvi12g1056 168 Pfam DnaJ domain 49 114 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1056 Vvi-Chr12 14864501 14865007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1056 45 114 C2H2 Transcription Factor Family AT1G74250 38.356 9.01e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1056 - - vvi:100265939 337.806