Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1051 ATGGCTGCAACTTCTGCTGCTGTGTTGAATGGGCTGGGCTCTCCGTTCTTGACTGGAGGCAAGAGGAGCCAGAGCTTGTTGTCTGCCGGGGTTGCAGCCAAAGCTGGTGCTGCTGTGCCTGCCCCCAGGAGGCTCATTGTCGTCGCTGCTGCCCCTAAGAAGTCGTGGCTTCCTGGTGTTAAAGCTGGTGGCAACCTCGTCGACCCTGAGTGGCTCGATGGCTCGCTTCCCGGTGACTATGGCTTTGATCCACTCGGACTAGGCAAGGACCCAGCATTCCTCAAGTGGTACAGGGAAGCCGAGCTGATCCACGGGCGATGGGCCATGGCAGCAGTTGTGGGAATCTTCGTCGGCCAAGCCTGGAGCGGCATCCCATGGTTCGAAGCCGGAGCAGCCCCTGGCGCCGTTGCACCGTTCTCTTTCGGGACCCTCCTTGGAACCCAACTCCTGCTCATGGGGTGGGTTGAGAGCAAGAGGTGGGTGGATTTCTTCAACCCGGAGTCACAGTCCGTGGAATGGGCCACCCCGTGGTCGAGGACGGCTGAGAACTTTGCCAACGCCACCGGGGAGCAGGGCTACCCGGGAGGGAAATTCTTCGACCCACTGTCACTCGCTGGCACAATCAAAGATGGAGTGTACATCCCAGATGTGGAAAAGCTCGAGAGACTGAAACTAGCGGAGATTAAGCATGCAAGGATTGCCATGTTGGCTATGCTAATCTTCTACTTTGAGGCTGGCCAAGGGAAGACACCCCTTGGAGCTCTTGGCTTGTAA 774 0.5814 MAATSAAVLNGLGSPFLTGGKRSQSLLSAGVAAKAGAAVPAPRRLIVVAAAPKKSWLPGVKAGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAAPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIPDVEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1051 257 FunFam Chlorophyll a-b binding protein, chloroplastic 69 256 - -
Vvi12g1051 257 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 50 255 IPR001344 GO:0009765|GO:0016020
Vvi12g1051 257 Gene3D Chlorophyll a/b binding protein domain 69 256 - -
Vvi12g1051 257 Pfam Chlorophyll A-B binding protein 69 245 IPR022796 -
Vvi12g1051 257 SUPERFAMILY Chlorophyll a-b binding protein 65 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1051 Vvi-Chr12 14705726 14706625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1051 3 257 Chloroplast and Mitochondria Gene Families AT1G15820 80.156 1.01e-147 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1051 K08917 - vvi:100241887 496.123