Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1043 ATGGGCGCCTCCTTCATTCATACACCCACATTGTTCTTTCTCTGGTTCTCCATGGCTGCTGCATTGGTGCAAGGCCAAGGCACTCGGGTTGGCTTCTATTCTCGTACATGTCCTCAAGCTGAATCCATTGTTCAGAAAACTGTTCAGTCTCATTTCCAATCCAATCCAGCCATTGCCCCTGGCCTGCTTCGCATGCACTTTCATGACTGTTTTGTCAGGGGCTGTGATGCTTCTATCCTTATAAATGGAACTTCCACCGAGAAAACAACAGTACCGAACAGTCTGATAAATGGATATGATGTTATTGATGATGCCAAGACCCAGCTCGAAGCCGCTTGCCCTGGAGTGGTCTCTTGCGCTGATATTCTTGCCCTCGCTGCCCGCGACTCTGTGGTTCTGACTAAAGGACTAACGTGGAAAGTGCCTACGGGACGTAGAGATGGGCGAGTTTCATTGGCATCTGATGTTAACAATTTGCCTAGCCCTCGCGACTCTATTGAAGCCCAAAAGCAGAAGTTTGCTGACAAGGGTCTCACTGATCAAGATCTCGTTACTCTTGTTGGAGGACACACCATTGGAACTTCAGCATGCCAATTCTTCAGTTATAGACTATACAACTTCAGTACCACGACTGCAAATGGTGCTGACCCTTCCATGGATGCCACATTCGTAACTCAGCTACAAGCCCTCTGCCCAGCTGATGGCGATGGGAGCAGGCGCATTGCACTGGACACTGGTAGCTCAAACACATTTGACGCATCTTTCTTTACAAACTTGAAGAATGGACGTGGAGTACTGGAGTCTGATCAGAAGTTATGGACGGATGCTTCCACCAAAACTTTTGTTCAGCGCTTCCTGGGGGTTAGAGGGCTGCTTGGGTTGAACTTCAACGTTGAGTTTGGGAGGTCTATGGTGAGGATGAGCAACATTGGGGTGCAGACAGGGACTGAGGGTGAAATTCGCAGAGTGTGTACAGCAATTAATTAA 987 0.4843 MGASFIHTPTLFFLWFSMAAALVQGQGTRVGFYSRTCPQAESIVQKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILINGTSTEKTTVPNSLINGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTKGLTWKVPTGRRDGRVSLASDVNNLPSPRDSIEAQKQKFADKGLTDQDLVTLVGGHTIGTSACQFFSYRLYNFSTTTANGADPSMDATFVTQLQALCPADGDGSRRIALDTGSSNTFDASFFTNLKNGRGVLESDQKLWTDASTKTFVQRFLGVRGLLGLNFNVEFGRSMVRMSNIGVQTGTEGEIRRVCTAIN* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1043 328 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Vvi12g1043 328 SUPERFAMILY Heme-dependent peroxidases 29 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 Gene3D - 31 328 - -
Vvi12g1043 328 CDD secretory_peroxidase 29 327 IPR033905 GO:0004601|GO:0042744
Vvi12g1043 328 Pfam Peroxidase 44 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 ProSiteProfiles Plant heme peroxidase family profile. 27 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 Gene3D Peroxidase, domain 2 160 307 - -
Vvi12g1043 328 PANTHER PEROXIDASE 25-RELATED 18 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 FunFam Peroxidase 31 161 - -
Vvi12g1043 328 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1043 328 FunFam Peroxidase 160 307 - -
Vvi12g1043 328 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1043 Vvi-Chr12 14508775 14509952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1043 27 328 Peroxidase AT5G64120 64.238 2.64e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1043 K00430 - vvi:100246878 659.062