Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1039 ATGTTTGTGTTTCTCTTGCTTGCCAAAGCCTTTGCATTGGTGCATGGCCAAGGCACAAGGGTTGGTTTCTATTCAGCTTCATGCCCTCAAGCTGAATTCATTGTTCAGCTAACTGTTGCAGCTCATTTCCAATCTGATCCAGCCATTGCCCGTGGCCTGCTTCGCATGCACTTTCATGACTGTTTTGTCAGGGGCTGTGATGCTTCTATCCTTATCAATGGAACGTCCACCGAGAAAACAACCACTCCAAACAGTCTTTTAAAAGGATATGATGCTATTGATGATGCCAAATCCCAGATTGAAGACGTCTGCCCTGGGGTGGTCTCTTGCGCTGATATTCTTGCCCTGGCCGCCCGTGATGCTGTGGTTCTGACCAATGGACCACGCTGGCTAGTGCTAACGGAACGAAGAGATGGGCGAGTTTCATTGGCATCCGACACTAACAATTTGCCAGGCTTCACTGAATCCATTGCCTCTCAAAAGAAAAAATTTGCAGACAAGGGTTTTAATGATCAAGATCTCGTTACTCTTGTTGGAGGACACACCATCGGAACTGCAGCATGCCAGTCCTTCAGATACAGATTATACAACTGCAGCAATACATCAGCAAATGGTGGTGACCCTTGCATGGACGCCGCATTCGTTTCTCAACTACAAAAGATGTGTCCAGCCAACCGTGATGGGAGTAAGCGTATTGCACTAGACACAGGTAGCTCCGACAGATTCGGCGGATCTTTCTTTACAAACTTGAGGAATGGACGCGGAATACTGGAGTCGGATTGGAAGTTGCGGACAGATGCTTCCACAAGAGCTTATGTACAACGGTTCTTGGGGCTGAGAGGGGAGCTGAACTTCAACATGGAGTTTGGGAGGTCCATAGTGAAGATGAGTAATTAG 897 0.476 MFVFLLLAKAFALVHGQGTRVGFYSASCPQAEFIVQLTVAAHFQSDPAIARGLLRMHFHDCFVRGCDASILINGTSTEKTTTPNSLLKGYDAIDDAKSQIEDVCPGVVSCADILALAARDAVVLTNGPRWLVLTERRDGRVSLASDTNNLPGFTESIASQKKKFADKGFNDQDLVTLVGGHTIGTAACQSFRYRLYNCSNTSANGGDPCMDAAFVSQLQKMCPANRDGSKRIALDTGSSDRFGGSFFTNLRNGRGILESDWKLRTDASTRAYVQRFLGLRGELNFNMEFGRSIVKMSN* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1039 298 Gene3D - 22 298 - -
Vvi12g1039 298 PRINTS Plant peroxidase signature 249 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 PRINTS Plant peroxidase signature 291 298 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 PRINTS Plant peroxidase signature 126 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 PRINTS Plant peroxidase signature 172 184 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 PRINTS Plant peroxidase signature 107 117 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 PRINTS Plant peroxidase signature 233 248 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 PRINTS Plant peroxidase signature 52 72 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 PRINTS Plant peroxidase signature 88 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 PRINTS Plant peroxidase signature 28 47 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 FunFam Peroxidase 22 152 - -
Vvi12g1039 298 SUPERFAMILY Heme-dependent peroxidases 20 298 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 ProSiteProfiles Plant heme peroxidase family profile. 18 298 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 ProSitePatterns Peroxidases proximal heme-ligand signature. 173 183 IPR019793 -
Vvi12g1039 298 FunFam Peroxidase 151 296 - -
Vvi12g1039 298 Pfam Peroxidase 37 276 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 Gene3D Peroxidase, domain 2 151 296 - -
Vvi12g1039 298 CDD secretory_peroxidase 20 298 IPR033905 GO:0004601|GO:0042744
Vvi12g1039 298 PRINTS Haem peroxidase superfamily signature 50 64 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 PRINTS Haem peroxidase superfamily signature 126 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 PRINTS Haem peroxidase superfamily signature 108 125 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 PRINTS Haem peroxidase superfamily signature 173 188 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g1039 298 ProSitePatterns Peroxidases active site signature. 50 61 IPR019794 GO:0004601
Vvi12g1039 298 PANTHER PEROXIDASE 25-RELATED 7 298 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1039 Vvi-Chr12 14448034 14449637 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1039 14 298 Peroxidase AT5G64120 57.143 1.96e-115 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1039 K00430 - vvi:100245326 593.964