Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1036 ATGGAGCCTTCTCAACTCCTTCAGCTTCTTCTCATTTTTGTTCTTCTTCTCTTACACAGTACGGATGCAGATGATCCTTCGGTTGATTCAACCAATCCCACCAGCAGCTCTGTAGTGATGAATGATTCAGCAGACGACTCCTATAAAAATCCTTTCAAGTCCCGTATGGTTATTATTTTTGTGGTTCTTGATGTTGTTGGTCTAATTGTTGTGGTGTGGCTTTTCATTCTTTACTATAAGAAAGCTAAGAAATTCAATAAAGAGATGAAGAATAGGGACAGTGAAGAAGAGCAAGAGAACGAAGAGGAGATAGAGGCAGGAGAAGGTGAAGTTGTGGGTGGGAAAGCGAAAGGGAAGCTCATATTCATGAGGAATGAAGCCTATTTTGAACTTGATGATCTCCTAAAAGCTTCTGCAGAGGGGTTGGGCAAAGGAAATTTCGGAAACAGTTACAAGGCCATGCTGGATGAAGACTTAATAGTTGTGGTAAAGCGGTTTAGGGATTTGAAACCTTTAAGCACCGAGGAATTTGGGAAGCATTTGCAGCTGATTGCTGCCCACAATCACCCTAATTTGCTTCCCCCTCTTGCTTACTATTGCTCCAGAGAAGAGAAGTTGCTGGTGTACAAATTTGCGGACAATGGTAACCTGTTTGACAGACTTCATGGGAGGGGGCAGAACCGGGTCCCATTTCGCTGGAATTCAAGATTAGCAGTGGCTCAAGCTGTAGCTCGAGCTTTGGAGCATCTGCACCTCAACACCAAAACAGAAACCATGGTCCCCCATGGCAACTTAAAATCGACAAATGTTCTTTATACCAAGAACAATACAATTGTTGTTTCTGATTATGGCCTTGCTTCAATAATAGCACCTCCAATCGCAGCTCAAAGGATGGTTTCATATAAATCACCCGAGTATCAAAATCTGAGAAGGGTCTCCAAGAAGTCTGACGTGTGGAGTTATGGCTCCCTCCTCCTGGAGCTCCTCACAGGAAGAATCCCGTCTCATACTGCACCAGAAGGCAATGGAGTGGACATCTGTAGTTGGGTCCACCGAGCAGTGAGAGAAGAATGGACAGCTGAGATTTTCGACCACGAGATATGTACTCGGAGAGGTTCCTGTGAAGGGATGCTGAGTCTACTGCAAATTGCAATTGGTTGCTGCGATAAGTCACCGGAGAAGCGTCCAGACATGACAGAAGTGGCCAAAGAAGTAGCAAATATACAGGCGGTCGGTGCAGAAGCAGACGATGACTTCTCCTTTGATCGATCATCATTTACCGATGATTCTCTGTCAACAAATCCATCAATCGTACTGGCAGATGCTTAA 1329 0.4462 MEPSQLLQLLLIFVLLLLHSTDADDPSVDSTNPTSSSVVMNDSADDSYKNPFKSRMVIIFVVLDVVGLIVVVWLFILYYKKAKKFNKEMKNRDSEEEQENEEEIEAGEGEVVGGKAKGKLIFMRNEAYFELDDLLKASAEGLGKGNFGNSYKAMLDEDLIVVVKRFRDLKPLSTEEFGKHLQLIAAHNHPNLLPPLAYYCSREEKLLVYKFADNGNLFDRLHGRGQNRVPFRWNSRLAVAQAVARALEHLHLNTKTETMVPHGNLKSTNVLYTKNNTIVVSDYGLASIIAPPIAAQRMVSYKSPEYQNLRRVSKKSDVWSYGSLLLELLTGRIPSHTAPEGNGVDICSWVHRAVREEWTAEIFDHEICTRRGSCEGMLSLLQIAIGCCDKSPEKRPDMTEVAKEVANIQAVGAEADDDFSFDRSSFTDDSLSTNPSIVLADA* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1036 442 Gene3D Phosphorylase Kinase; domain 1 113 211 - -
Vvi12g1036 442 MobiDBLite consensus disorder prediction 89 108 - -
Vvi12g1036 442 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 51 411 IPR046959 -
Vvi12g1036 442 Gene3D Transferase(Phosphotransferase) domain 1 212 417 - -
Vvi12g1036 442 Pfam Protein tyrosine and serine/threonine kinase 140 404 IPR001245 GO:0004672|GO:0006468
Vvi12g1036 442 SUPERFAMILY Protein kinase-like (PK-like) 140 403 IPR011009 -
Vvi12g1036 442 Coils Coil 86 106 - -
Vvi12g1036 442 ProSiteProfiles Protein kinase domain profile. 136 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1036 Vvi-Chr12 14424906 14426480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1036 57 434 Receptor kinase-like Gene Family AT2G36570 35.732 1.05e-78 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi12g1036 PK_Tyr_Ser-Thr 4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1036 - - vvi:100255636 776.933