Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1035 ATGTCTTCATCACGTCGCCATTCGGAGGACTTGCCATACGTTCACAAGGTGGGCGTGCCTCCTAAGCAGGACCTTTTGAAGGAGTTCACAGACACTGTGAAAGAAACTTTCTTTGCAGATGACCCCTTAAGACCTTTTAAAGACCAGCCAAGATCGAGACAATTTGTACTTGGTCTTCAATCCCTTTTCCCAATTCTGGAATGGGGAAGGGATTACAACCTTACCAAACTTAGAGGTGATCTCATTGCTGGATTCACCATTGCAAGCCTCTGTATTCCTCAGGATATTGGATATGCAAAGCTTGCAAATCTTGCTCCTCAATATGGTTTATACAGTAGCTTTGTTCCACCACTTATCTATGCCTTCATGGGTAGCTCAAGAGACATTGCCATAGGACCAGTAGCTGTGGTGTCTCTCCTGATTGGAACTATGTTGCAGGATGTGATTGATCCAACTGAAAATGAAGTTGAGTATAGGCGGCTTGCATTCACTGCTACATTCTTTGCGGGCATCACTCAGGCCACACTAGGTTTCTTTAGATTGGGTTTCTTGATTGACTTCTTATCTCATGCTGCTATTGTCGGGTTTATGGCTGGAGCTGCCATTACCATTGCCCTTCAACAACTTAAAGGCTTGCTGGGCATAAAGAAGTTCACAAGGAAAACCGATATTATCTCTGTTATGCACTCAGTATGGAGCACAGTACATCATGGGTGGAACTGGGAGACCATAGTCATAGGATTATCATTCTTGGCTTTCCTTTTGTTGGCCAAGTATATTGGCAAGAAGAACAAGAAATTATTTTGGGTGCCTGCAATTGCTCCCTTGATCTCTGTCATACTTTCAACCTTTTTTGTGTATATCACTCATGCTGAAAAACATGGTGTTCAAATTGTCCCACATATTAGAAAAGGTGTCAATCCACCATCTCTTCATGAAATATATTTCACAGGAGGGTATGTCATTAAAGGCTTTAAGATCGGTGTTGTGGTCGGTTTGATAGCTCTAACGGAAGCTATAGCAATTGGAAGAACATTTGCAGCCATGAAGGGGTATCAGCTGGATGGAAACAAAGAAATGGTAGCATTAGGAACTATGAATATTGTGGGCTCAATGACATCTTGTTATGTTGCTACAGGATCCTTTTCTCGGTCAGCAGTGAATAACATGGCTGGCTGCCGCACAGCAGTTTCCAACATAGTGATGTCCTGCATTGTATTGCTAACTTTGGAAGTTATCACACCATTATTTAAGTACACCCCGAATGCCATACTCTCTTCTATCATCATATCTGCTGTGCTAAGCCTAATTGACATTCAAGCAATAGTTCTGATATGGAAGATCGATAAATTTGACTTTGTTGCTTGCATGGGAGCCCTTTTTGGTGTGGTTTTTGCTTCTGTTGAGATAGGGCTCTTAATTGCAATCTCCATATCCTTTATCAAAATCCTCCTGCAAGTGACTAGGCCCAGGACCACAATACTTGGGAAGCTCCCAAGGACAAATATTTACCGAAACATATATCAATATCCTGAAGCAGCAAAGGTGCCAGGCATTTTAATTGTCAGAGTTGACTCTGCAATTTACTTCTCCAACTCCAACTATGTTAAGGAGAGGATTTTGAGATGGCTAACTGATGAGGAGGAGCAACTGAAAGAAAACCAGCTACCAAGAATCCAATCTTTGATAGTCGAAATGTCACCTGTTACAGAAATTGACACTAGTGGCATCCATGCCCTAGAAGAGTTATATAAGAACTTGCAGAAGAGAGAAGTTCAGCTTAATCTGGCAAATCCTGGGCAAGTTGTGATTGACAAGCTCCATGCATCCAATTTTGCAAACTTGATTGGGCAGGACAAGATCTTTCTCAGTGTTGCAGACGCAGTTCTATCTTATGCTCCAAAGATGGAAGACCTTTAA 1920 0.4198 MSSSRRHSEDLPYVHKVGVPPKQDLLKEFTDTVKETFFADDPLRPFKDQPRSRQFVLGLQSLFPILEWGRDYNLTKLRGDLIAGFTIASLCIPQDIGYAKLANLAPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLIGTMLQDVIDPTENEVEYRRLAFTATFFAGITQATLGFFRLGFLIDFLSHAAIVGFMAGAAITIALQQLKGLLGIKKFTRKTDIISVMHSVWSTVHHGWNWETIVIGLSFLAFLLLAKYIGKKNKKLFWVPAIAPLISVILSTFFVYITHAEKHGVQIVPHIRKGVNPPSLHEIYFTGGYVIKGFKIGVVVGLIALTEAIAIGRTFAAMKGYQLDGNKEMVALGTMNIVGSMTSCYVATGSFSRSAVNNMAGCRTAVSNIVMSCIVLLTLEVITPLFKYTPNAILSSIIISAVLSLIDIQAIVLIWKIDKFDFVACMGALFGVVFASVEIGLLIAISISFIKILLQVTRPRTTILGKLPRTNIYRNIYQYPEAAKVPGILIVRVDSAIYFSNSNYVKERILRWLTDEEEQLKENQLPRIQSLIVEMSPVTEIDTSGIHALEELYKNLQKREVQLNLANPGQVVIDKLHASNFANLIGQDKIFLSVADAVLSYAPKMEDL* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1035 639 NCBIfam sulfate permease 64 628 IPR001902 GO:0016020|GO:0055085
Vvi12g1035 639 Pfam Sulfate permease family 77 457 IPR011547 GO:0016020
Vvi12g1035 639 Pfam STAS domain 510 628 IPR002645 -
Vvi12g1035 639 SUPERFAMILY SpoIIaa-like 511 629 IPR036513 -
Vvi12g1035 639 ProSiteProfiles STAS domain profile. 509 632 IPR002645 -
Vvi12g1035 639 ProSitePatterns SLC26A transporters signature. 106 127 IPR018045 GO:0008271|GO:0008272
Vvi12g1035 639 FunFam Sulfate transporter 31 489 635 - -
Vvi12g1035 639 Coils Coil 577 597 - -
Vvi12g1035 639 CDD STAS_SulP_like_sulfate_transporter 510 625 - -
Vvi12g1035 639 Gene3D STAS domain 489 635 IPR036513 -
Vvi12g1035 639 PANTHER SULFATE TRANSPORTER 26 632 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1035 Vvi-Chr12 14416663 14419921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1035 3 638 Inorganic Solute Cotransporters AT1G22150 74.057 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1035 K17470 - vvi:100260708 1218.37