Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1033 ATGCCCGAACCCGAAGGTTATATTGGAAATTCGAAAGATTACGTTGATGCGACCGGATACGAGGAGTTGTCGCAAAACCTGGTTGAGAGCGACAAAACTGTGAGAAGAGGAACTCCACCAGCATCGAAATCTGCAATTTCCACATTACCAAGTGTTGAGATTAAGTTGGAGAAGCAGGTTTTGAATTGCGCTATTTGTAAAGATGTGGTCTCCATTTGCGAGACTACTAGGAAATTGCCATGTGGCCATGGATACTATGGGGATTGCATCATCATTTGGTTGAATCCCAGGAATTCTTGTCCTATGTGTAGGTTTGAATTACCCACAGATGATTCTAAATATGAAGAAGAGAAGAAGGATCCTTGTTCTTCGATCTCGATAAGCTGTCGGAGTATTCTTCATTGGTTTTTCAGTGAACATGTGTTACAATGTAAATGCTCCAGTGTGTGGCGGTACAGGATAAGGCACTTGCAACTCCCTACCCGATCACTCCAATCAACGGTTGATGATGTGATTACTAAGATTTGGACATTTACAGAACAGGACATAGGGCTGCATCCTTGA 564 0.4273 MPEPEGYIGNSKDYVDATGYEELSQNLVESDKTVRRGTPPASKSAISTLPSVEIKLEKQVLNCAICKDVVSICETTRKLPCGHGYYGDCIIIWLNPRNSCPMCRFELPTDDSKYEEEKKDPCSSISISCRSILHWFFSEHVLQCKCSSVWRYRIRHLQLPTRSLQSTVDDVITKIWTFTEQDIGLHP* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1033 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 111 IPR013083 -
Vvi12g1033 187 ProSiteProfiles Zinc finger RING-type profile. 63 104 IPR001841 -
Vvi12g1033 187 SMART ring_2 63 103 IPR001841 -
Vvi12g1033 187 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 29 108 - -
Vvi12g1033 187 SUPERFAMILY RING/U-box 62 110 - -
Vvi12g1033 187 Pfam Ring finger domain 62 104 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1033 Vvi-Chr12 14347965 14348528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1033 7 120 C3H Transcription Factor Family AT5G01980 50.862 1.88e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1033 - - vvi:100250690 208.379