Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1028 ATGGCTACCCTTGAACTTCATGGCCAACAGTCACTTAACCATGTTGAAATTTCAATTCATGGGAATCACTCTTTGCCGCATGAACATTGCCAAGAAGGAGAAGCTGAGGATTTCGACTACTCTAAGAGGGGACAGTGGCTTCGAGCTGCTACGTTGGGGGCCAATGATGGGCTGGTCTCCATCGCATCACTGATGATGGGCGTTGGAGCTGTCAAGGAAGATATCACGGCCATGATTCTTGCTGGTTTTGCAGGGTTGGTTGCCGGGGCTTGTAGTATGGCTATAGGAGAGTTTGTCTCCGTGTATACTCAATTGGACATAGAATTAGCTCAAATGAAGAGAGACAAGAGAAGGAGAGACAGCACAGAGAATGAGGAAAAAACTGAGAATGAGAAACTGCCAAATCCTTTTCAGGCTGGTATAGCATCTGCCTTGTCTTTTGCTCTAGGGGCAATGATTCCATTACTGGCAGCTGCATTCATAAGGGAGCATAAGGTGAGGCTAGGTGTTGTTGTTGCCGCTTCGAGCTTGGCATTGTTGGCATTTGGGGGGCTAGGAGCAGTGCTTGGGAGGACTCCTGTGGGGCGGTCATGTGCTCGGGTTCTAGTTGGAGGCTGGATGGCTATGGCTATTACATTTGGGCTCACCAGGTTGATTGGAGCAACTGGGCTTTAA 675 0.4889 MATLELHGQQSLNHVEISIHGNHSLPHEHCQEGEAEDFDYSKRGQWLRAATLGANDGLVSIASLMMGVGAVKEDITAMILAGFAGLVAGACSMAIGEFVSVYTQLDIELAQMKRDKRRRDSTENEEKTENEKLPNPFQAGIASALSFALGAMIPLLAAAFIREHKVRLGVVVAASSLALLAFGGLGAVLGRTPVGRSCARVLVGGWMAMAITFGLTRLIGATGL* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1028 224 MobiDBLite consensus disorder prediction 113 132 - -
Vvi12g1028 224 MobiDBLite consensus disorder prediction 113 133 - -
Vvi12g1028 224 Pfam VIT family 127 216 IPR008217 GO:0005384|GO:0030026
Vvi12g1028 224 Pfam VIT family 47 128 IPR008217 GO:0005384|GO:0030026
Vvi12g1028 224 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 26 219 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1028 Vvi-Chr12 14218495 14219169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1028 18 224 Nodulin-like Gene Family AT3G43660 65.217 8.69e-93 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1028 K22736 - vvi:100252125 411.764