Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1027 ATGGCTTCCCTTGAACGAGGCGATCAACTGTCACGTAAAAATATTGAAATTTCCGTTCGTGAGAATCACTTTGTGCCCATTGAACAACACCAAGATCCAAAAGGTGAGGATTTCAACTACGCTAAGAGGGGACAATGGCTTCGTGCTGCTATATTAGGGGCTAATGATGGGTTAGTCTCTGTTGCATCATTGATGATGGGTGTTGGAGCTGTCAAGAGGGATGTCATGGCCATGATTCTTGCTGGTTTTGCTGGGCTAGTTGCTGGAGCTTGTAGTATGGCAATAGGAGAGTTTGTCTCTGTGTATACTCAGCTGGACATAGAAGTGGCTCAAATGAAAAGAGAGAAGGGAACCAACAGTGCAGGGAATGAGGAAAAACCTGAGGATGAGCAGCTGCCAAATCCTTTTCAGGCTGCTATAGCATCCGCCCTTGCATTTGCAGTAGGGGCAGTGGTCCCACTACTGGCAGCTGCATTCATAAAGGAGCACAAGGTGAGGCTTGGTGTAGTGATTGCTGTGTCAAGCTTGGCCCTGTTGGTGTTTGGAGGGGTAGGAGCAGCACTTGGAAGGACTCCCATGGCACGGTCTTGTGCTAGGGTTCTAGTTGGAGGTTGGATGGCTATGGGTATTACATTTGGGCTCACCAAGTTGATTGGCTCTACTGGACTTTAA 672 0.4807 MASLERGDQLSRKNIEISVRENHFVPIEQHQDPKGEDFNYAKRGQWLRAAILGANDGLVSVASLMMGVGAVKRDVMAMILAGFAGLVAGACSMAIGEFVSVYTQLDIEVAQMKREKGTNSAGNEEKPEDEQLPNPFQAAIASALAFAVGAVVPLLAAAFIKEHKVRLGVVIAVSSLALLVFGGVGAALGRTPMARSCARVLVGGWMAMGITFGLTKLIGSTGL* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1027 223 Pfam VIT family 47 123 IPR008217 GO:0005384|GO:0030026
Vvi12g1027 223 Pfam VIT family 124 215 IPR008217 GO:0005384|GO:0030026
Vvi12g1027 223 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 30 218 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1027 Vvi-Chr12 14213981 14214652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1027 21 223 Nodulin-like Gene Family AT3G43660 63.547 7.67e-91 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1027 K22736 - vvi:100257248 401.749