Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1026 ATGGCAGCCCTTAATCCTGCATGTAAAAACGTTGAAATTTCGGTTCATGAGGATAACTTAGTGCCCCATGGACAACCCCAAGATCCTAAAGCTCAGCATTTCCACTCCTCTAACAGGGGACAATGGCTTCGGGCTGCTATATTGGGGGCTAACAACGGGTTGGTCTCGGTTGCTTCACTGATGATGGGTGTTGGAGCTCTCAAGAGAGATGTCATGGCCATGGCTCTTGCTGGGTTTGCAGGGTTAGTTGCCGGGTCTTGTAGTGTGGCAATAGGAGAGTTTGTCTCTATATACACCCAGTTAGATATAGAGGCAACTCAAATGAGAAGAAACAGCAGAGAAGATAGTAAGAATTTGGAGCTGCCAAATCCTTTTCAGGTTGCTATAACATCTGCCTTGACCTTTGTGGTGGGGGCAATGGTTCCAGTAGTGGCGGCTGCAATCACAAGGGATCATAAGGTGAGGCTTGGGGTGGTGGTTGCTGTGTCGAGCTTGGCATTTTTGGTATTTGGAGGGGTAGGGGCAATTCTGGGGAGGACTCCTGTGGGGTGGTCTTGCGCCAGGGTTCTAGTTGGAGGCTGGATGGCTATGGCTATTACTTCTGGGCTCACCATGTTGATTGGCTCCAGTCATTAA 636 0.4937 MAALNPACKNVEISVHEDNLVPHGQPQDPKAQHFHSSNRGQWLRAAILGANNGLVSVASLMMGVGALKRDVMAMALAGFAGLVAGSCSVAIGEFVSIYTQLDIEATQMRRNSREDSKNLELPNPFQVAITSALTFVVGAMVPVVAAAITRDHKVRLGVVVAVSSLAFLVFGGVGAILGRTPVGWSCARVLVGGWMAMAITSGLTMLIGSSH* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1026 211 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 25 207 IPR008217 GO:0005384|GO:0030026
Vvi12g1026 211 Pfam VIT family 43 116 IPR008217 GO:0005384|GO:0030026
Vvi12g1026 211 Pfam VIT family 119 204 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1026 Vvi-Chr12 14203710 14204345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1026 27 209 Nodulin-like Gene Family AT3G43660 58.470 1.65e-75 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1026 K22736 - vvi:100262359 397.512