Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1004 ATGACTCACATAAGCACCCGTGTGGCAGGCACAATTGGGTATCTTGCATCAGAGTATGCCATGCGTGGGCACCTCACAGAGAAGGCCGATGTGTTTAGTTTTGGTGTTGTAGCTCTAGAGATTGTCAGTGGAAGGCCAAATTCTGACACAAGCTTGGAAGAAGAAAAGGCTTATCTTCTTGAATGGACTTGGCAACTACACGAGAACAACTGTGAAATTCAACTGGTAGACTCAAGATTATCAGAATTCAGTGAAGAAGCAAGCAGAATGATAGGAGTCGCTCTTCTGTGCACTCAGGCATCACCAACGCTACAGCCACCAATGTCCCGCGTGGTGGCAATGCTTTCAGGAGATATTGCAGTGTCCAGAGTTCCAACAAAGCCCGTATACTTGACAGATTGGAAGTTCAACGATAGGAATCTCTAA 426 0.4601 MTHISTRVAGTIGYLASEYAMRGHLTEKADVFSFGVVALEIVSGRPNSDTSLEEEKAYLLEWTWQLHENNCEIQLVDSRLSEFSEEASRMIGVALLCTQASPTLQPPMSRVVAMLSGDIAVSRVPTKPVYLTDWKFNDRNL* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1004 141 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 139 - -
Vvi12g1004 141 SUPERFAMILY Protein kinase-like (PK-like) 3 132 IPR011009 -
Vvi12g1004 141 Gene3D Transferase(Phosphotransferase) domain 1 1 124 - -
Vvi12g1004 141 Pfam Protein tyrosine and serine/threonine kinase 11 63 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1004 Vvi-Chr12 13782390 13787172 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1004 2 138 Receptor kinase-like Gene Family AT1G56120 70.290 2.04e-62 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g1004 PK_Tyr_Ser-Thr 2.6e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1004 - - vvi:109121540 244.202