Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1001 ATGTATTTTTACCAAAAGTCAGAGATAAAAGGCATGCTCCTAGGTATGGATGCTAGGCCATACACTTTCAGTTATGCTGAACTAAGAAATGCCACTGAAGACTTCAGTCCTTCTAATAAGCTTGGAGAGGGCGGATTTGGACCTGTCTATAAGGGGACACTCTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTATCATCCCACCAAGGAAAGAATCCGTTTGTAACAGAGATTGCAACCATATCAGCTGTGCAACATCGTAACCTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGTAAACAAGAGCCTTGATCAAGCACTATTTGGTAAGAGAAACGGAAGTTTGGACCTTGATTGGCCAACCCGTTATGATATATGCTTGGGTGTAGCCAGGGGTCTAGCCTATCTTCATGAGGAATCGTGA 462 0.4264 MYFYQKSEIKGMLLGMDARPYTFSYAELRNATEDFSPSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVSSHQGKNPFVTEIATISAVQHRNLVKLYGCCIEGVNRSLVYEYLVNKSLDQALFGKRNGSLDLDWPTRYDICLGVARGLAYLHEES* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1001 153 FunFam Leucine-rich repeat receptor-like protein kinase 5 110 - -
Vvi12g1001 153 Gene3D Phosphorylase Kinase; domain 1 10 110 - -
Vvi12g1001 153 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 153 - -
Vvi12g1001 153 ProSiteProfiles Protein kinase domain profile. 35 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1001 153 Gene3D Transferase(Phosphotransferase) domain 1 111 153 - -
Vvi12g1001 153 Pfam Protein tyrosine and serine/threonine kinase 38 152 IPR001245 GO:0004672|GO:0006468
Vvi12g1001 153 SUPERFAMILY Protein kinase-like (PK-like) 19 150 IPR011009 -
Vvi12g1001 153 SMART tyrkin_6 35 153 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1001 Vvi-Chr12 13761602 13762567 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1001 13 153 Receptor kinase-like Gene Family AT1G56120 72.340 1.04e-64 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g1001 PK_Tyr_Ser-Thr 1.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1001 - - vvi:100853440 274.248