Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1000 ATGACTCACATAAGCACCCGTGTTGCAGGCACAATTGGGTATCTCGCACCAGAGTATGCCATGCGTGGGCACCTCACAGAAAAGGCCGATGCGTGTAGTTTTGGTGTTGTAGCTCTAGAGATTGTTAGTGGAAGTCCAAATTCTGACACAAGCTTGGAAGAAGAAAAGGCAATTTAA 177 0.4633 MTHISTRVAGTIGYLAPEYAMRGHLTEKADACSFGVVALEIVSGSPNSDTSLEEEKAI* 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1000 58 Gene3D Transferase(Phosphotransferase) domain 1 1 58 - -
Vvi12g1000 58 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 54 - -
Vvi12g1000 58 SUPERFAMILY Protein kinase-like (PK-like) 3 49 IPR011009 -
Vvi12g1000 58 Pfam Protein tyrosine and serine/threonine kinase 10 49 IPR001245 GO:0004672|GO:0006468
Vvi12g1000 58 ProSiteProfiles Protein kinase domain profile. 1 58 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1000 Vvi-Chr12 13761211 13761496 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1000 2 56 Receptor kinase-like Gene Family AT1G56120 81.818 6.01e-25 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g1000 PK_Tyr_Ser-Thr 1.6e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1000 - - vvi:109121540 102.834