Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0999 ATGATGAAGTTGATGCCCGGAGCTCAATCAGTCAGCTGGGTCTTTGTTGCCTTGTATGGTGTTTATGTGATTGGGCTCTTTCATGCAGCTGCTGCTCAATCCACTGAAGCCAATGCTACCACTGATCCATCTGAAGTGACAATTTTGAATTCTATATTTCAACAATGGGGAATCTCAGCATCAAACGAATGGAACACAAGTGGGGAACCATGCACCGGAGCTGCTCTTGATAGCGCTGACATTAAAAATCCCGGAATCAAATGTGATTGTTCCTACGACAATGCCTCTACTTGCCATATCACTCAACTGAAAGTTTATGCATTGGACGTCGTTGGTGCAATCCCAGATGAGCTATGGAATTTGACTTTCCTCACCAATCTGAATTTGGGTCAAAATTATTTGACAGGTTCCCTGTCTGCATCCATTGGCAATCTAACAAGCATGCAGTACTTGAGCCTGGGAATTAATGCACTATCAGGGGAGCTTCCTAAGGAACTTGGACAGCTTACTGATTTACGATCAATTGCCTTTGGGACAAACAACTTCTCTGGTTCTCTGCCATCTGAGCTTGGGAATTTGGTGAAGTTAGAACAACTTTACTTTGATAGCTCTGGTTTAAGTGGTGATATTCCTTCAACATTTGCTAATCTACAGAGCCTGACTACAGTGTGGGCGTCGGATAATGAACTCACAGGAAACATACCTGATTTCATTGGGAATTGGTCAAAGCTAACTGTCTTGAGGCTTCAGGGGAACTCTTTTGAAGGTTCCATCCCGTCATCATTTTCCAATTTAACCTCTTTGACCGATTTGAGAATAAGTGATATATCTAACGGAAGCTCTTCTTCACTGGAATTTATAAAGGACATGAAGTCGCTAAGCACCTTAATAATAAGGAATAATAATATCTCTGATGCCATTCCATCAAATATTGGAGAATATGGAAGTTTGACTCAGCTGGATTTGAGTTTCAACAATCTAAGTGGACAACTTCCAGAATCTCTCTTCAATTTGAGTCAACTCACTTACTTGTTCCTTGGAAATAATCAGTTGACTGGTAGTCTACCTTCACAGAAAAGTACATCTCTTCTCAATATTGACTTGTCATACAATGGACTATCAGGGAGCTTTCCTTCTTGGGTTGATGAAGAGAATTTACAACTTAATTTGGTCGCCAACAACTTCACACTAGACAGTTCAAACAGCAGTGTTCTTCCTTCAGGATTGAACTGCCTTCAACAAAATTTTCCTTGCAATAGAGGTTCTGGAATTTATTACAACTTTGCAATCAAGTGTGGTGGTCCTCAGATTACATCTTCTGATCAGATTGTGTTTGAGAGGGATAATGAAACTCTTGGTCCAGCTACATACTATGTGACTGACGAAAACAGGTGGGCAGTTAGCAATGTTGGATTGTTTTCCGGAAGCAACAATCCTCAGTACACAAGCACGTCTTCATCTCAATTCACAAATACTTTAGACTCAGAGCTGTTCCAAACAGCAAGGATCTCTGCTGGATCATTAAGATACTATGGCTTAGGCCTTGAGAATGGAAACTATACTTTGACCCTCCAATTTGCAGAGACAGCAATTGTTAATTCAAATTCTTGGAAGAGTCTTGGAAGGCGTGTCTTTGATGTTTATATCCAGGGAGATTTGGTTTTAAAAGATTTTGACATAAGAAAGGAGGCAGGAGGGGTCTCTTTCCAAGCTGTTAAGAAAGAATTCACGGCTCAAGTATTGGAAAATTACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAGATTTTGAACCTACCGTGAGTAACACTGCTCCAAATGGGAAGAAGAATAGGACTGGCTTGATAGTGGGAATTGCTGTTGGCCTTGGAGTTGTGTGCTTTCTATCTGTTTTCGCTCTTTATTATTTCGTTCTAAGAAGAAAAAAGCCATCAGAAAACCAAGATGAAGAGCTCCTAGGTATGGATGCTAGGCCATACACTTTCAGTTATGCTGAACTAAAAAATGCCACTGGAGACTTCAGTCCTTCTAATAAGCTTGGAGAGGGCGGATTTGGACCTGTCTATAAGGGGACACTTTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTAGCATCCCACCAAGGAAAGAAGCAGTTTGTAGCAGAGATTGCAACCATATCAGCTGTGCAACATCGTAACCTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGAAAACAAGAGCCTTGATCAAGCACTATTTGGTAAGGGAAACGGAAGTTTGGACCTTGATTGGCCAACCCGTTATGATATATGCTTGGGTGTAGCCAGGGGTCTAGCCTATCTTCATGAGGAATCGCGAGTTCGCATTGTACACAGAGATGTGAAGGCCAGCAATATTCTGCTTGACTATCATCGCAACCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACGAAGACTCACATAAGCACCCGTGTTGCAGGCACAATTGGGTATCTTGCACCGGAGTATGCCATGCGTGGGCACCTCACAGAAAAGGCCGATGTGTTTGGTTTTGGTGTAGTAGCTCTAGAGATTGTCAGTGGAAGGCCAAATTCTGACACAAGTTTGGAAGAAGAAAAGACTTATCTTCTTGAATGGGCTTGGCAACTACATGAAAACAACCATGAAATTGAACTGGTAGACTCAAGGTTATCAGAATTCAGTGAAGAAGAAGCAAGAAGAATGATAGGAGTCGCTCTTCTGTGCACTCAGACATCACCAACACTACGGCCACCAATGTCCCGTGCGGTGGCAATGCTTTCAGGAGATATTGAAGTGTCCAGAGTTACAACAAAGCCCGGATACTTAACAGATTGGAAGTTCAACGATGCATCCAGCTTTATGAGTGAAAATAGCCATTTCAACTCATCAACAAGTATCAGCATGGCAGCTGATGCAGACCTGGCCAAAAATGCACCTTATATTCAGTTTATAGGAGTCATGAAGGTGAACTTTGCACTGTGGCTTTTTGAGTTGCTATCAAGACATTGTATGGCTTTTAGTGCCCTGGTTAACTTGGTGAAAAAATATCAATGGGAGATCAGGCTGGGACAAACCAGAAATGAGCTAGTTAAGCTGAATGTATCTTTTGGATATGTGATTGGAATTCAATCAGTCAGCTGCGTCTTTGTTGCCTTGTGTAGTGTCTATGTGACTGGGCTTTTTCACATAGCTGCTGCTCAAACCACTGAAGCCAATGCTACCACTGATCCGTCTGAAGTGAGAGTTTTGAATTCTATATTTCGACAATGGGGAATCTCAGCATCGAGCCAATGGAGAACAATTGGGGAACCATGCACCGGCGCTGCCATTGACTCGACCAGCATTGATAGCGCTGACTATAATTTTGGAATCAAATGTGATTGTTCCTACGACAATGCCTCTACTTGCCATATCACTCAACTGAAAGTTTATGCATTGGACGTTGTTGGTGTAATCCCAGATGAGCTATGGAATTTGACTTTCCTCACCAGTCTGAATTTGGGTCAAAATTATTTGACAGGTCCCCTGTCTGCATCCATTGGCAATCTAACAAGCATGCAGTACTTGAGCCTGGGAATTAATGCACTATCAGGGGAGCTTCCTAAGGAACTTGGACAGCTTACTGATTTACGATCATTTGCTTTTGGGACAAACAACTTCTCTGGTTCCCTGCCGTCTGAGATTGGGAATTTGGTGAAGTTAGAGCAACTTTACTTTGATAGCTCTGGGGTAAGTGGTGAGATTCCTTCAACATTTGCTAATCTACAGAGCCTGACTATAGTGTGGGCGTCAGATAATGAACTCACAGGAAACATACCTGATTTCATTGGGAATTGGTCAAAGCTCACTGTCTTGAGGCTTCAGGGGAACTCTTTTGAAGGTCCCATCCCCTCATCATTTTCCAATTTAACCTCTTTGACCGATTTGAGAGTAAGTGATATATCTAATGCGAGCTCTTCTTCACTGGAATTTATAAAGAATATGAAGTTGCTAAGCACCTTAGTACTAAGGAATAATAATATCTCTGATTCTATTCCATCAAATATTGGAGAATATGGAAGTTTGACTCAGCTGGATTTGAGTTTCAACAATCTAAGTGGACAACTTCCAGAATCTCTCTTCAATTTGAGTCAACTCACTTACTTGTTCCTGGGAAATAATCAGTTAACTGGTACTCTACCTTCACTGAAAAGTACATCTCTTCTCAATATTGACTTGTCATACAATGGACTATCAGGGAGCTTTCCTTCTTGGGTTGATGAAGAGAATTTACAACTTAATTTGGTCGCCAACAACTTCACACTAGACAGTTCAAACAGCAGTGTTCTTCCTTCAGGATTGAACTGCCTTCAACAAAATTTTCCTTGCAATAGAGGTTCCGGAATTTATTACAACTTCGCAATCAAGTGTGGTGGTCCTCAGATTACATCTTCTGATCAGATCGTGTTTGAGAGGGATAGTGAAACTCTTGGTCCAGCTACATACTATGTGACTGACACAAACAGGTGGGCATTTAGCAATGTTGGAAAGTTTTCCGGAAGCAACAATTACACAAGCACGTCCTCATCTCTATTCACAAATACTTTAGACTCAGAGCTGTTCCAAACAGCAAGGATCTCTGCTGGATCGTTAAGATACTATGGCTTAGGCCTTAAGAATGGAAACTATACTTTGACCCTCCAATTTGCAGAGACAGCAATTGTTAATTCAAATTCTTGGAAGACTCTTGGAAGGCGTGTCTTCGATATTTATATCCAGGGAGATTTAATTTTAAAAGATTTTGACATAAGAAAGGAGGCAGGGGGGGTCTCTTTCCAAGCTGTTAAGAAAGAATTCACAGCTCAGGTATTGGAAAATTACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAAATTTTGAGCCTACTGTGCCTAACACTGCTCCAAATGGGAAGAAGCATAGGACTGGTTTGATAGTTGGAATTGCTGTTGCCCTTGGACTTGTGTGCTTTCTAGCTGTTTTCTCTGTTTATTATTTCGTTCTAAGAAGAAAAAAGCCATATGAAAACCAAGACGAAGAGCTCCTAGGTATGGAGGCTAGGCCATACACTTTTAGTTATGCTGAACTAAAAAATGCCACTGGAGACTTCAGTCCTTCTAATAAGCTTGGAGAGGGTGGATTTGGACCTGTCTATAAGGGGACACTTTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTATCATCGCACCAAGGAAAGAATCAGTTTGTAACAGAGATTAAAACCATATCAGCTGTGCAGCATCGTAACCTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGAAAACAAGAGCCTTGATCAAGCACTATTTGGAGAGGGAAATTTGGACCTTGTTTGGCAAACCCGTTATGATATATGCTTGGGTGTAGCCAGGGGTCTAGCCTATCTTCATGAGGAATCGCGACTTCGCATTGTACACAGAGATGTGAAGGCCAGCAATATTCTGCTTGACTATTATCTCAACCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACGAAGACTCACATAAGCACCCGTGTTGCAGGCACAATTGGGTATCTTGCACCAGAGTATGCCATGCGTGGTCACCTCACAGAAAAGGCCGATGTGTTTGGTTTTGGTGTTGTAGCTCTAGAGATTGTCAGTGGAAGGCCAAATTCTGATACAAGCTTGGAAGAAGAAAAGACTTATCTTCTTGAATGGGCTTGGCAGCTACATGAAACCAACTGTGAACTTGAACTGGTAGACTCAGGATTATCAGAATTTAGTGAAGAAGAAGCAACAAGAATGATAGGAGTCGCTCTTCTGTGCACTCAGACATCACCGACACTACGCCCACCAATGTCCCATGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGTCCAGAGTTACAACAAAGCCCGGATACTTAACGGATTGGAAGTTCAATGATGCATCCAGCTTTATGAGTGAAAATAGTGATTTGAGTTCACCAAGTATCAGCATGGCAGTTGATACAGACTGTTCTGCATTAACTGTCAATAAAACTGAATCCATGAGATTATTGGAGAGGGCAGGTGAAGAATAG 6318 0.4179 MMKLMPGAQSVSWVFVALYGVYVIGLFHAAAAQSTEANATTDPSEVTILNSIFQQWGISASNEWNTSGEPCTGAALDSADIKNPGIKCDCSYDNASTCHITQLKVYALDVVGAIPDELWNLTFLTNLNLGQNYLTGSLSASIGNLTSMQYLSLGINALSGELPKELGQLTDLRSIAFGTNNFSGSLPSELGNLVKLEQLYFDSSGLSGDIPSTFANLQSLTTVWASDNELTGNIPDFIGNWSKLTVLRLQGNSFEGSIPSSFSNLTSLTDLRISDISNGSSSSLEFIKDMKSLSTLIIRNNNISDAIPSNIGEYGSLTQLDLSFNNLSGQLPESLFNLSQLTYLFLGNNQLTGSLPSQKSTSLLNIDLSYNGLSGSFPSWVDEENLQLNLVANNFTLDSSNSSVLPSGLNCLQQNFPCNRGSGIYYNFAIKCGGPQITSSDQIVFERDNETLGPATYYVTDENRWAVSNVGLFSGSNNPQYTSTSSSQFTNTLDSELFQTARISAGSLRYYGLGLENGNYTLTLQFAETAIVNSNSWKSLGRRVFDVYIQGDLVLKDFDIRKEAGGVSFQAVKKEFTAQVLENYIEIHLFWAGKGTCCVPAQGTYGPSISAISATPDFEPTVSNTAPNGKKNRTGLIVGIAVGLGVVCFLSVFALYYFVLRRKKPSENQDEELLGMDARPYTFSYAELKNATGDFSPSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVASHQGKKQFVAEIATISAVQHRNLVKLYGCCIEGVNRSLVYEYLENKSLDQALFGKGNGSLDLDWPTRYDICLGVARGLAYLHEESRVRIVHRDVKASNILLDYHRNPKISDFGLAKLYDDTKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDTSLEEEKTYLLEWAWQLHENNHEIELVDSRLSEFSEEEARRMIGVALLCTQTSPTLRPPMSRAVAMLSGDIEVSRVTTKPGYLTDWKFNDASSFMSENSHFNSSTSISMAADADLAKNAPYIQFIGVMKVNFALWLFELLSRHCMAFSALVNLVKKYQWEIRLGQTRNELVKLNVSFGYVIGIQSVSCVFVALCSVYVTGLFHIAAAQTTEANATTDPSEVRVLNSIFRQWGISASSQWRTIGEPCTGAAIDSTSIDSADYNFGIKCDCSYDNASTCHITQLKVYALDVVGVIPDELWNLTFLTSLNLGQNYLTGPLSASIGNLTSMQYLSLGINALSGELPKELGQLTDLRSFAFGTNNFSGSLPSEIGNLVKLEQLYFDSSGVSGEIPSTFANLQSLTIVWASDNELTGNIPDFIGNWSKLTVLRLQGNSFEGPIPSSFSNLTSLTDLRVSDISNASSSSLEFIKNMKLLSTLVLRNNNISDSIPSNIGEYGSLTQLDLSFNNLSGQLPESLFNLSQLTYLFLGNNQLTGTLPSLKSTSLLNIDLSYNGLSGSFPSWVDEENLQLNLVANNFTLDSSNSSVLPSGLNCLQQNFPCNRGSGIYYNFAIKCGGPQITSSDQIVFERDSETLGPATYYVTDTNRWAFSNVGKFSGSNNYTSTSSSLFTNTLDSELFQTARISAGSLRYYGLGLKNGNYTLTLQFAETAIVNSNSWKTLGRRVFDIYIQGDLILKDFDIRKEAGGVSFQAVKKEFTAQVLENYIEIHLFWAGKGTCCVPAQGTYGPSISAISATPNFEPTVPNTAPNGKKHRTGLIVGIAVALGLVCFLAVFSVYYFVLRRKKPYENQDEELLGMEARPYTFSYAELKNATGDFSPSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVSSHQGKNQFVTEIKTISAVQHRNLVKLYGCCIEGVNRSLVYEYLENKSLDQALFGEGNLDLVWQTRYDICLGVARGLAYLHEESRLRIVHRDVKASNILLDYYLNPKISDFGLAKLYDDTKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDTSLEEEKTYLLEWAWQLHETNCELELVDSGLSEFSEEEATRMIGVALLCTQTSPTLRPPMSHVVAMLSGDIEVSRVTTKPGYLTDWKFNDASSFMSENSDLSSPSISMAVDTDCSALTVNKTESMRLLERAGEE* 2106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0999 2105 SUPERFAMILY L domain-like 90 398 - -
Vvi12g0999 2105 FunFam Leucine-rich repeat receptor-like protein kinase 1502 1691 - -
Vvi12g0999 2105 SMART LRR_typ_2 1222 1246 IPR003591 -
Vvi12g0999 2105 SMART LRR_typ_2 145 169 IPR003591 -
Vvi12g0999 2105 SMART LRR_typ_2 1367 1391 IPR003591 -
Vvi12g0999 2105 SMART LRR_typ_2 315 338 IPR003591 -
Vvi12g0999 2105 SMART LRR_typ_2 1392 1415 IPR003591 -
Vvi12g0999 2105 SMART LRR_typ_2 290 314 IPR003591 -
Vvi12g0999 2105 FunFam Leucine-rich repeat transmembrane protein kinase 1116 1355 - -
Vvi12g0999 2105 SUPERFAMILY L domain-like 1172 1479 - -
Vvi12g0999 2105 FunFam Leucine-rich repeat receptor-like protein kinase 1739 1845 - -
Vvi12g0999 2105 Pfam Protein kinase domain 698 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0999 2105 Pfam Protein kinase domain 1773 1977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0999 2105 Gene3D Ribonuclease Inhibitor 1161 1336 IPR032675 -
Vvi12g0999 2105 Pfam Malectin domain 427 612 IPR021720 -
Vvi12g0999 2105 Pfam Malectin domain 1504 1687 IPR021720 -
Vvi12g0999 2105 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 48 1002 - -
Vvi12g0999 2105 Gene3D Transferase(Phosphotransferase) domain 1 771 977 - -
Vvi12g0999 2105 Gene3D Transferase(Phosphotransferase) domain 1 1846 2050 - -
Vvi12g0999 2105 ProSiteProfiles Protein kinase domain profile. 695 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0999 2105 SMART serkin_6 695 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0999 2105 SMART serkin_6 1770 2038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0999 2105 CDD STKc_IRAK 1776 2038 - -
Vvi12g0999 2105 FunFam Leucine-rich repeat receptor-like protein kinase 425 616 - -
Vvi12g0999 2105 Gene3D Phosphorylase Kinase; domain 1 1733 1845 - -
Vvi12g0999 2105 Gene3D Phosphorylase Kinase; domain 1 658 770 - -
Vvi12g0999 2105 FunFam Leucine-rich repeat transmembrane protein kinase 43 278 - -
Vvi12g0999 2105 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1890 1902 IPR008271 GO:0004672|GO:0006468
Vvi12g0999 2105 SUPERFAMILY Protein kinase-like (PK-like) 1754 2066 IPR011009 -
Vvi12g0999 2105 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515
Vvi12g0999 2105 FunFam Putative LRR receptor-like serine/threonine-protein kinase 280 403 - -
Vvi12g0999 2105 Gene3D Ribonuclease Inhibitor 278 403 IPR032675 -
Vvi12g0999 2105 CDD STKc_IRAK 701 965 - -
Vvi12g0999 2105 FunFam Leucine-rich repeat receptor-like protein kinase 664 770 - -
Vvi12g0999 2105 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Vvi12g0999 2105 SMART LRR_bac_2 1294 1314 - -
Vvi12g0999 2105 SMART LRR_bac_2 217 237 - -
Vvi12g0999 2105 SMART LRR_bac_2 1415 1435 - -
Vvi12g0999 2105 SMART LRR_bac_2 338 358 - -
Vvi12g0999 2105 SMART LRR_bac_2 1391 1411 - -
Vvi12g0999 2105 SMART LRR_bac_2 314 334 - -
Vvi12g0999 2105 Gene3D Ribonuclease Inhibitor 43 277 IPR032675 -
Vvi12g0999 2105 Gene3D Ribonuclease Inhibitor 1337 1496 IPR032675 -
Vvi12g0999 2105 SUPERFAMILY Protein kinase-like (PK-like) 678 965 IPR011009 -
Vvi12g0999 2105 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1357 1480 - -
Vvi12g0999 2105 Gene3D - 1503 1691 - -
Vvi12g0999 2105 Gene3D - 426 616 - -
Vvi12g0999 2105 FunFam Putative LRR receptor-like serine/threonine-protein kinase 771 977 - -
Vvi12g0999 2105 ProSiteProfiles Protein kinase domain profile. 1770 2044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0999 2105 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1846 2050 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0999 Vvi-Chr12 13721467 13757142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0999 43 313 Receptor kinase-like Gene Family AT1G56120 26.838 1.13e-12 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0999 Pkinase 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0999 - - cpep:111811393 2649.77