Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0998 ATGAAGTTGGTACCCGGAGCTCAATCAGTCAGATGCATCTTTGTTGCCTTGTGTAGTGTCTATGTGATTGGGCTTTTTCATATAGCTGTTGCTCAAACCACTGAAGCCAATGCTACCACTGATCCATCTGAAGTGAGAGTTTTGAATTCTATATTTCAACAATGGGGAATCTCAGCATCAAACCAATGGAACACAAGTGGGGAACCATGCACCGGAGCTGCCATTGACTCAACCAGCATTGATAGCTCTGACTATAATCCCGGAATCAAATGTGATTGTTCCTACGACAATGCCTCTACTTGCCATATCACTCAACTGAAAGTTTATGCATTGGACGTCGTTGGTGTAATCCCAGATGAGCTATGGAATTTGACTTTCCTCACCAATCTGAATTTGGGTCAAAATTATTTGACAGGTCCCCTATCTGCATCCATTGGCAATCTAACAAGCATGCAGTACTTGAGCATGGGAATTAATGCACTATCAGGGGAGCTTCCTAAGGAACTTGGACAGCTGACTGATTTACGTTCATTAGCTTTTGGGACAAACAACTTCTCTGGTTCTCTGCCGTCTGAGATTGGGAATTTGGTGAAGTTAGAGCAACTTTACTTTGATAGCTCTGGGGTAAGTGGTGAGATTCCTTCAACATTTGCTAATCTACAGAGCTTGACTACAGTGTGGGCGTCAGATAATGAACTCACAGGAAACATACCCGATTTCATTGGGAATTGGTCAAAGCTCACTGTCTTGAGGCTTCAGGGGAACTCTTTTGAAGGTGCCATCCCCTCATCATTTTCCAATTTAACCTCTTTGACCGATTTGATGGTAAGTGATATATCTAATGCAAGCTCTTCTTCACTGGAATTTATAAAGGATATGAAGTTGCTAAGCACCTTAGTACTAAGGAATAATAATATCTCTGATTCCATTCCATCAAATATTGGAGAATATGGAAGTTTGACTCAGCTGGATTTGAGTTTCAACAATCTAAGTGGACAACTTCCAGAATCACTCTTCAATTTGAGTCAACTCTCTCTCTTGTTCCTTGGAAATAATCAGTTAACTGGTACTCTACCTTCACTGAAAAGTACATCTCTTCTCAATATTGACTTGTCATACAATGGACTATCAGGGAGCTTTCCTTCTTGGGTTGATGAAGAGAATTTACAACTTAATTTGGTTGCCAACAACTTCACACTAGACAGTTCAAACAGCAGTGTTCTTCCTTCAGGATTGAACTGCCTTCAACAAAATTTTCCTTGCAATAAAGGTTCCGGAATTTATTACAACTTCGCAATCAAGTGTGGTGGTCCTCAGATTACTTCTTCTGATCAGATTGTGTTTGAGAGGGACAATGAAACTCTTGGTCCAGCTACATACTATGTGACTGACACAAACAGGTGGGCAGTTAGTAATGTTGGATTGTTTTCTGGAAGCAACAATCCTCAGTACACAAGCAGGTCTTCATCTCAATTCACAAATACTTTAGACTCAGAGCTGTTCCAAACAGCAAGGATCTCTGCTGGATCGCTAAGATACTATGGTTTAGGCCTTGAGAATGGAAACTATAATTTGACCCTCCAATTTGCCGAGACAGCAATTGTTAATTCAAATTCTTGGAAGAGTCTTGGAAGGCGTGTCTTCGATATTTATATCCAGGGAGATTTGGTTTTAAAAGATTTTGACATAAGAAAGGAGGCAGGAGGGGTCTCTTTCCAAGCTGTTAAGAAAGAATTCACGGCTCAAGTATTGGAAAATTACATTGAAATCCATCTCTTTTGGGCTGGAAAAAGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAAATTTTGAGCCTACTGTGCCTAACACTGCTCCAAATGGGAAGAAGAATTGGACTGGTTTGATAGTGGGAATTGCTGTTGCCCTTGGACTTGTGTGCTTTCTAGCTGTTTTCTCTGTTTATTATTTCGTTCTAAGAAGAAAAAAGCCATATGAAAACCAAGACGAAGAGCTCCTAGGTATGGATGCTAGGCCATACACTTTCAGTTATGCTGAACTAAAAAATGCCACTGGAGACTTCAGTCCTTCTAATAAGCTTGGAGAGGGTGGATTTGGACCTGTCTATAAGGGGACACTTTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTATCATCACACCAAGGAAAGAATCAGTTTGTAACAGAGATTGCAACCATATCAGCTGTGCAACATCGTAACCTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGAAAACAAGAGCCTTGATCAAGCACTATTTGGAGAGGGAAATTTGGACCTTGTTTGGCCAACCCGTTATGATATATGCTTGGGTGTAGCCAGGGGTCTAGCCTATCTTCATGAGGAATCGCGACTTCGCATTGTACACAGAGATGTGAAGGCCAGCAATATTCTGCTTGACTATTATCTCAACCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACGAAGACTCACATAAGCACCCGTGTTGCAGGCACAATTGGGTATCTTGCACCGGAGTATGCCATGCGTGGTCACCTCACAGAAAAGGCCGATGTGTTTGGTTTTGGTGTTGTAGCTCTAGAGATTGTCAGTGGAAGGCCAAATTCTGATACAAGCTTGGAAGAAGAAAAGACTTATCTTCTTGAATGGGCTTGGCAGCTACATGAAACCAACCGTGAAATTGAACTGGTAGACTCAAGATTATCAGAATTCAGTGAAGAAGAAGCAAGAAGAATGATAGGAGTCGCTCTTCTGTGCACTCAGACATCACCGACACTACGCCCACCAATGTCCCGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGTCCAGAGTTACAACAAAGCCCGGATACTTAACAGATTGGAAGTTCAATGATGTATCCAGCTTTATGAGTGAAAATAGCGATTTGAATTCACCAAGTATCAGCATGGAAGTTGATAGAGACTCTTCTCCATTAACTGTCAATAAAACTGAACTCCATGAGATTATTGGAGAGGGCAGGTGA 3096 0.4154 MKLVPGAQSVRCIFVALCSVYVIGLFHIAVAQTTEANATTDPSEVRVLNSIFQQWGISASNQWNTSGEPCTGAAIDSTSIDSSDYNPGIKCDCSYDNASTCHITQLKVYALDVVGVIPDELWNLTFLTNLNLGQNYLTGPLSASIGNLTSMQYLSMGINALSGELPKELGQLTDLRSLAFGTNNFSGSLPSEIGNLVKLEQLYFDSSGVSGEIPSTFANLQSLTTVWASDNELTGNIPDFIGNWSKLTVLRLQGNSFEGAIPSSFSNLTSLTDLMVSDISNASSSSLEFIKDMKLLSTLVLRNNNISDSIPSNIGEYGSLTQLDLSFNNLSGQLPESLFNLSQLSLLFLGNNQLTGTLPSLKSTSLLNIDLSYNGLSGSFPSWVDEENLQLNLVANNFTLDSSNSSVLPSGLNCLQQNFPCNKGSGIYYNFAIKCGGPQITSSDQIVFERDNETLGPATYYVTDTNRWAVSNVGLFSGSNNPQYTSRSSSQFTNTLDSELFQTARISAGSLRYYGLGLENGNYNLTLQFAETAIVNSNSWKSLGRRVFDIYIQGDLVLKDFDIRKEAGGVSFQAVKKEFTAQVLENYIEIHLFWAGKRTCCVPAQGTYGPSISAISATPNFEPTVPNTAPNGKKNWTGLIVGIAVALGLVCFLAVFSVYYFVLRRKKPYENQDEELLGMDARPYTFSYAELKNATGDFSPSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVSSHQGKNQFVTEIATISAVQHRNLVKLYGCCIEGVNRSLVYEYLENKSLDQALFGEGNLDLVWPTRYDICLGVARGLAYLHEESRLRIVHRDVKASNILLDYYLNPKISDFGLAKLYDDTKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDTSLEEEKTYLLEWAWQLHETNREIELVDSRLSEFSEEEARRMIGVALLCTQTSPTLRPPMSRVVAMLSGDIEVSRVTTKPGYLTDWKFNDVSSFMSENSDLNSPSISMEVDRDSSPLTVNKTELHEIIGEGR* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0998 1031 FunFam Putative LRR receptor-like serine/threonine-protein kinase 774 978 - -
Vvi12g0998 1031 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 997 - -
Vvi12g0998 1031 FunFam Leucine-rich repeat receptor-like protein kinase 428 619 - -
Vvi12g0998 1031 Coils Coil 916 936 - -
Vvi12g0998 1031 Gene3D Phosphorylase Kinase; domain 1 661 773 - -
Vvi12g0998 1031 Gene3D Ribonuclease Inhibitor 42 282 IPR032675 -
Vvi12g0998 1031 SUPERFAMILY L domain-like 97 405 - -
Vvi12g0998 1031 ProSiteProfiles Protein kinase domain profile. 698 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0998 1031 Gene3D - 429 619 - -
Vvi12g0998 1031 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Vvi12g0998 1031 CDD STKc_IRAK 704 966 - -
Vvi12g0998 1031 FunFam Putative LRR receptor-like serine/threonine-protein kinase 283 406 - -
Vvi12g0998 1031 FunFam Leucine-rich repeat transmembrane protein kinase 42 281 - -
Vvi12g0998 1031 SMART serkin_6 698 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0998 1031 Pfam Protein kinase domain 701 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0998 1031 FunFam Leucine-rich repeat receptor-like protein kinase 666 773 - -
Vvi12g0998 1031 SUPERFAMILY Protein kinase-like (PK-like) 681 966 IPR011009 -
Vvi12g0998 1031 Gene3D Transferase(Phosphotransferase) domain 1 774 978 - -
Vvi12g0998 1031 Gene3D Ribonuclease Inhibitor 283 406 IPR032675 -
Vvi12g0998 1031 Pfam Malectin domain 430 615 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0998 Vvi-Chr12 13624911 13636163 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0998 42 316 Receptor kinase-like Gene Family AT1G56120 28.315 7.10e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0998 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0998 - - vvi:100262365 2017.66