Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0990 ATGGGTGATCATAACTTCAATCTCCCACCCGGCTTCCGATTTTACCCTACTGATGAAGAGCTCGTCGTCCATTTCCTCCACCGCAAGGCCGCCCTCTTGCCCTGCCATCCAGACGTCATCCCTGATCTTGATCTCTATCCCTATGATCCCTGGGAGCTTGATGGCAAGGCGTTGGCGGAGGGGAATCAATGGTACTACTTCAGCCGGAGGACGCAGAACCGAAGCACCAACAACGGGTACTGGAAGACATTGGGCATTGATGAGCCTATTATGAGCAGTGGTGGGAAGAGAGTTGGCATGAAGAAATATATGGTATTTTACATAGGAGAGGCACCTTCTGGGATTAAGAGCAGTTGGATAATGCAGGAGTACAGGCTTTCCGATTCTGGTTCTTCTAGTAGTAGCGGTCGATCATCGTCCAAAAGAAGAGGACATTCCAAAATAGATTATAGTAAATGGGTTGTATGTAGGGTTTCTGAAAGAAATAGCGACGACGATGATGATGGGACGGAGTTGTCTTATTTGGACGAGGTTTTCCTATCGTTGGATGATCTTGATGAAATAAGTCTGCCAAATTAA 579 0.4698 MGDHNFNLPPGFRFYPTDEELVVHFLHRKAALLPCHPDVIPDLDLYPYDPWELDGKALAEGNQWYYFSRRTQNRSTNNGYWKTLGIDEPIMSSGGKRVGMKKYMVFYIGEAPSGIKSSWIMQEYRLSDSGSSSSSGRSSSKRRGHSKIDYSKWVVCRVSERNSDDDDDGTELSYLDEVFLSLDDLDEISLPN* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0990 192 PANTHER NAC TRANSCRIPTION FACTOR 56 8 166 - -
Vvi12g0990 192 Pfam No apical meristem (NAM) protein 9 126 IPR003441 GO:0003677|GO:0006355
Vvi12g0990 192 MobiDBLite consensus disorder prediction 127 146 - -
Vvi12g0990 192 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
Vvi12g0990 192 Gene3D NAC domain 17 165 IPR036093 GO:0003677|GO:0006355
Vvi12g0990 192 ProSiteProfiles NAC domain profile. 8 161 IPR003441 GO:0003677|GO:0006355
Vvi12g0990 192 FunFam NAC domain-containing protein 104 17 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0990 Vvi-Chr12 13499885 13500653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0990 1 163 NAC Transcription Factor Family AT1G61110 43.275 2.68e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi12g0990 NAM 1.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0990 - - vvi:100243491 387.497