Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0989 ATGAAGGCGTTCTGCTTGTGTCTCAGCCTCCTCTTTTTAGGCTTTGTGAGTTCAGACACCAGTTTTGTGTACAATGGCTTCCTTAAAGCAGATTTGAGCTTGGATGGAGCATCCCAGCTGAGATCCAATGGTATACTCTCCTTAACCAATGATTCTGTAAGGCTCATAGGCCATGCTTTCTATCCATCTCCCATACATTTCAAGAGAAGCAAAGACCACAGGTCATGGGTCGTCACATTTAGCACCAACTTTGTCTTCTCCATGGCTCCCAAGTATCCTGGCCTCGGAGGTCATGGTCTGGCCTTTGTTCTCTTGTCCACCAAGGCGCCCATGGGTTGTCTTCCAAACCAGTACCTGGGACTCCCAAATGTTACTAGCAATGCAGATTTCTCGACTCGGGTGCTTGCCGTCGAGTTTGATGCTGTCCAAAATCTTGAGCTCATGGATATCAATGATAACCATGTAGGAATAGATATATCCAGCTTGATCTCTAATGTTTCTAAGCCAGCTGCTTATTATTTCACCAACAACAGCAATAACTCCATTGCTTTCAAGAGTGGAGATCCTATTCAGGCCTGGATTGAGTACAATAGCCAGGAGCAGTTGATGAATGTTACCATTTCTCCTCTTGGCATTCCCAAGTCGTTTCGGCCATTGATATCGTTCCCCATTGACCTGTCAATGGTGCTGAACGAATACATGTACATTGGCTTCTCAGCTTCCACTGGCCTGCTCACAGCCGCTCATAACGTGCATGGTTGGAGCTTCAGGATTGGAGGAAGGGCAGCAGACTTGGATCCTCTCCGGCTCCCATCTCCAGTGACAAGGTCCCGAAAGGTTCTGCATCAAAGGGGACTCACCCTAGGTATCATTTTAGCTAGTGCTACTCTAGTTATCTTGGTGATTTCTGGCACTGCTCATGTCGTACATAGGATTAGGAACAAGGAGGAAGTCTTAGAAGAATGGGAAGTTGAATATGGAGCTCACAGATTCAAGTATTCTGATCTCTTCTCTGCTACTAGGGGGTTTAGAGAGAAAAATCTAATTGGGTCTGGAGGATTTGGGAGAGTCTACAAGGGGATAATCCCCAGAACAGGGCTAGAAGTTGCAATAAAGAGGGTTGCTCATGACTCCCGACAAGGAATGAAAGAATTTGTTGCAGAAATAATAAGCATGGGACGACTTAGGCACCGAAACTTGGTGCAGTTACATGGATGGTGCCGAAGGCAAGATGAGCTTATCCTTGTTTATGACTATGTACCAAATGGAAGCCTGGACAAGATCCTGTTTGATGACCAACAGAAAAAGAAAATACTGACTTGGGAGCAAAGATACAAGATCCTCATTGGTGTTTCACAAGCTTTGCTCTATCTCCATGAAGAATGTGATCAAAGAGTGGTTCACAGAGATGTGAAGCCGAGCAATGTTCTCATAGACGCAGAACTCAATGCCAGGCTTGGGGATTTTGGCCTGGCCAGGATGTACAAACATGGAAACAATCCAGAGACGACTCACATTGTAGGAACACTTGGGTACCTAGCCCCTGAGCTCACTAGAATTGGGAAGGCCACAACAAGCATAGATGTGTATGCTTATGGTGTGCTCATGCTAGAAGTAGCTACAGGAAGGAGGCCAATTGAGCCCCAGAGGAATGCCCAGGAACTGGTATTGATGGACTGGGTAAGGGAGCTACATTCCAGAGGAGAGATCCTGAGTGTCATCGATCCCACGTTGGATGAGTACAACCCAGATGAAGCCAAGCTTGTTCTTAGTCTTGGCCTGCTTTGCTCTCATCCCCATCCTGATTACAGGCCAGATATAAGAAGGGTTATCCAATACCTCCTGAAGGATGTTTGCCTTCCTGAGCTACCTCCTGATGTTCACCTAGAAGTTCCAGGGACAATGATAGAATTCTCAGATACTTACCCTGATGCATGA 1938 0.4623 MKAFCLCLSLLFLGFVSSDTSFVYNGFLKADLSLDGASQLRSNGILSLTNDSVRLIGHAFYPSPIHFKRSKDHRSWVVTFSTNFVFSMAPKYPGLGGHGLAFVLLSTKAPMGCLPNQYLGLPNVTSNADFSTRVLAVEFDAVQNLELMDINDNHVGIDISSLISNVSKPAAYYFTNNSNNSIAFKSGDPIQAWIEYNSQEQLMNVTISPLGIPKSFRPLISFPIDLSMVLNEYMYIGFSASTGLLTAAHNVHGWSFRIGGRAADLDPLRLPSPVTRSRKVLHQRGLTLGIILASATLVILVISGTAHVVHRIRNKEEVLEEWEVEYGAHRFKYSDLFSATRGFREKNLIGSGGFGRVYKGIIPRTGLEVAIKRVAHDSRQGMKEFVAEIISMGRLRHRNLVQLHGWCRRQDELILVYDYVPNGSLDKILFDDQQKKKILTWEQRYKILIGVSQALLYLHEECDQRVVHRDVKPSNVLIDAELNARLGDFGLARMYKHGNNPETTHIVGTLGYLAPELTRIGKATTSIDVYAYGVLMLEVATGRRPIEPQRNAQELVLMDWVRELHSRGEILSVIDPTLDEYNPDEAKLVLSLGLLCSHPHPDYRPDIRRVIQYLLKDVCLPELPPDVHLEVPGTMIEFSDTYPDA* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0989 645 CDD lectin_legume_LecRK_Arcelin_ConA 20 260 IPR001220 GO:0030246
Vvi12g0989 645 PANTHER - 27 616 - -
Vvi12g0989 645 SMART serkin_6 343 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0989 645 FunFam L-type lectin-domain containing receptor kinase S.4 18 264 - -
Vvi12g0989 645 Gene3D - 17 258 - -
Vvi12g0989 645 FunFam Lectin-domain containing receptor kinase A4.3 328 419 - -
Vvi12g0989 645 Pfam Legume lectin domain 20 266 IPR001220 GO:0030246
Vvi12g0989 645 SUPERFAMILY Protein kinase-like (PK-like) 324 625 IPR011009 -
Vvi12g0989 645 Gene3D Transferase(Phosphotransferase) domain 1 420 619 - -
Vvi12g0989 645 CDD STKc_IRAK 349 616 - -
Vvi12g0989 645 Pfam Protein kinase domain 344 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0989 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vvi12g0989 645 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524
Vvi12g0989 645 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 274 IPR013320 -
Vvi12g0989 645 Gene3D Phosphorylase Kinase; domain 1 303 419 - -
Vvi12g0989 645 ProSiteProfiles Protein kinase domain profile. 343 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0989 645 FunFam L-type lectin-domain containing receptor kinase S.4 420 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0989 Vvi-Chr12 13486775 13488712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0989 22 625 Receptor kinase-like Gene Family AT3G55550 48.849 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi12g0989 Pkinase 3.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0989 - - vvi:100248628 1280.39