Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0984 ATGTCGTTCCGCAGCATAGTTCGTGATGTGAGGGATGGGTTTGGCAGCTTATCTCGGAGGAGTTTTGATGTCAGGTTGCTGGGGCATAGTAGGGGTAAATCTATTGGTTCATTTCACGAGATGCATGATCAGCCTCTGGTAATTCAAAATAGCCGTTGGGCTAACCTGCCTCCAGAGCTGCTTTATGATATTATTAAGAGGCTGGAGGAGAGTGAGAGTACATGGCCGTCTCGAAAACATGTTGTTGCATGCGCTGCTGTTTGCCGGTCATGGAGGACTATGTGTAAAGAAATTGTTAGAAGTCCAGAGTTTTGTGCCAAACTTACCTTTCCAGTGTCCCTGAAGCAGCCAGGGCCACGTGATGGGACTATCCAATGCTTCATCAAAAGGGATAAATCTAACTTAACTTACCACCTTTTTCTATGTCTTAGCCCTGCTTTGCTAGTTGAAAATGGGAAGTTCCTTCTTTCTGCAAAAAGGAATCGCCGGACAACTTGCACAGAGTATGTTATCTCCATGGATGCTGAGAACATTTCAAGGTCAAGCAGCACTTACATTGGAAAACTGAGGTCGAATTTCCTTGGAACAAAATTCATAATATATGACACACAGCCTCCACATACCTGTGCACATATTCCTCCTCCAGGGAGAACAAGCAAAAGATTTTATTCCAAGAAGGTCTCGCCAAAAGTTCCAACTGGCAGCTACAACATTGCCCATATCACTTATGAACTGAATGTGCTGGGCACCCGTGGCCCACGACGGATGCATTGCACTATGCACTCAATCCCGGCCTCATCACTAGATGCAGGAGGAAGTGTTCCAGGTCAGCCAGAGCTCCTTCCCCGTGCTCTTGAAGACTCGTTCAGGAGCATCTCCTTCTCAAATTCACTGGACCACTCTGTTGAGTTCAGCAGCTCTCGATTTTCTGAGGTTTGTGGACCATGTGATGACGAAGAGGGTAAAGCGAGGCCCTTGGTTCTTAAAAACAAGGCTCCAAGATGGCACGAGCAATTACAATGCTGGTGCCTGAACTTCCGGGGGCGAGTAACGGTTGCATCAGTGAAGAACTTTCAGTTGATTGCAGCCACACAGCCAGCCGCTGGTGCACCCACACCATCTCAACCAGCCCCACCAGAGCATGACAAGATCATTCTCCAGTTTGGAAAAGTCGGGAAAGACATGTTCACTATGGATTATCGCTACCCTCTGTCTGCCTTTCAGGCATTTGCCATCTGCTTGAGCAGCTTTGACACCAAATTAGCATGTGAATAG 1275 0.4729 MSFRSIVRDVRDGFGSLSRRSFDVRLLGHSRGKSIGSFHEMHDQPLVIQNSRWANLPPELLYDIIKRLEESESTWPSRKHVVACAAVCRSWRTMCKEIVRSPEFCAKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRNRRTTCTEYVISMDAENISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTCAHIPPPGRTSKRFYSKKVSPKVPTGSYNIAHITYELNVLGTRGPRRMHCTMHSIPASSLDAGGSVPGQPELLPRALEDSFRSISFSNSLDHSVEFSSSRFSEVCGPCDDEEGKARPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0984 424 Pfam Tub family 114 419 IPR000007 -
Vvi12g0984 424 SUPERFAMILY Tubby C-terminal domain-like 102 424 IPR025659 -
Vvi12g0984 424 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Vvi12g0984 424 Gene3D Tubby Protein; Chain A 112 418 IPR025659 -
Vvi12g0984 424 SUPERFAMILY F-box domain 49 108 IPR036047 GO:0005515
Vvi12g0984 424 FunFam Tubby-like F-box protein 110 424 - -
Vvi12g0984 424 PANTHER TUBBY-RELATED 42 422 - -
Vvi12g0984 424 FunFam Tubby-like F-box protein 48 101 - -
Vvi12g0984 424 CDD F-box_AtTLP-like 53 97 - -
Vvi12g0984 424 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Vvi12g0984 424 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Vvi12g0984 424 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Vvi12g0984 424 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Vvi12g0984 424 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Vvi12g0984 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Vvi12g0984 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Vvi12g0984 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Vvi12g0984 424 Pfam F-box domain 53 100 IPR001810 GO:0005515
Vvi12g0984 424 Gene3D - 48 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0984 Vvi-Chr12 13356593 13359565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0984 1 424 TUB Transcription Factor Family AT1G76900 68.980 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vvi12g0984 Tub 9.2e-118 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0984 K19600 - vvi:100247010 845.499