Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0980 ATGGCGTCGTCGAAGGTGATGGCGTCAACGGCGTCGACAAATTCGGATCTGCCGCGCCAGTCATCTATATGTTCACTCACGATCGCGGAGCTCCAGAGCGATCAGAACAAGAATTTCGGGTCCATGAATATGGACGACCTGCTTAAGAACATCTACGGTGACAACCTCTCCCCGGAGAGTTTCTCGACGGCGGCGGGGAACAACGGAGATGGAGGCGGCGGGGGCGTGGGCGGGGTCGACGAGGGAGGGTCACTGTCGCGGCAGGGGAGCTTCTCGCTGTCGCGGCAGGGGAGCTTCTCGCTGCCGAAGAGCGTGGGGAACAAGACTGTGGATGAGGTGTGGAAGGAGATCGTGGCGGGGAATGATCAGAGGCGGGTGGGTGCAGGGGAGGCTCTGGAGGAGATGACTCTGGAGGATTTTCTGGCCAAGGCTGGGGCAGTGAGGGAGGAAGATGTGAGGGTTCAGGTAATGGGCGGAGCAGGGAGTTACGGTGTGGATGCGATGATGAACGGTCAATTTCAGGCGCCGCAGATGCAAGCGCAGGGTGTCGATGGGGCAATGGTGGCCTTTGGGAATGGCATTGATGGAAGAGTTACTGGCGCTGGAAGAGGAAAGAGAAGAGCGGTGGAGGAGCCGGTGGATAAGGCTACGCAGCAAAGGCAGCGGCGGATGATCAAGAACAGAGAATCGGCAGCCAGGTCCAGGGAGCGAAAGCAGGCTTACACAGTTGAGCTAGAGTCGCTGGTGACCCACCTGGAGGAGGAGAATGCACGGCTCTTAAGAGAGGAGGCTGAACAGTCTAAGGAGAGGTATAAGCAGTTGATGGAGAACCTGGTTCCAGTTGTGGAGAAACGAAGACCACCTCGTGTTCTTCGAAGAGTGCAGTCTGTTCTGTGGTAG 900 0.5789 MASSKVMASTASTNSDLPRQSSICSLTIAELQSDQNKNFGSMNMDDLLKNIYGDNLSPESFSTAAGNNGDGGGGGVGGVDEGGSLSRQGSFSLSRQGSFSLPKSVGNKTVDEVWKEIVAGNDQRRVGAGEALEEMTLEDFLAKAGAVREEDVRVQVMGGAGSYGVDAMMNGQFQAPQMQAQGVDGAMVAFGNGIDGRVTGAGRGKRRAVEEPVDKATQQRQRRMIKNRESAARSRERKQAYTVELESLVTHLEEENARLLREEAEQSKERYKQLMENLVPVVEKRRPPRVLRRVQSVLW* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0980 299 CDD bZIP_plant_BZIP46 219 266 - -
Vvi12g0980 299 Coils Coil 242 277 - -
Vvi12g0980 299 Gene3D - 217 275 - -
Vvi12g0980 299 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 18 296 IPR043452 GO:0003700|GO:0045893
Vvi12g0980 299 SMART brlzneu 215 279 IPR004827 GO:0003700|GO:0006355
Vvi12g0980 299 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 222 237 IPR004827 GO:0003700|GO:0006355
Vvi12g0980 299 Pfam bZIP transcription factor 217 276 IPR004827 GO:0003700|GO:0006355
Vvi12g0980 299 SUPERFAMILY Leucine zipper domain 219 270 IPR046347 GO:0003700|GO:0006355
Vvi12g0980 299 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 217 269 IPR004827 GO:0003700|GO:0006355
Vvi12g0980 299 MobiDBLite consensus disorder prediction 62 98 - -
Vvi12g0980 299 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 217 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0980 Vvi-Chr12 13276799 13299833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0980 108 299 bZIP Transcription Factor Family AT5G44080 51.707 3.54e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi12g0980 bZIP_1 2.4e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0980 K14432 - vvi:100250466 540.036