LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi12g0974	ATGAGAGAAGGAAGGCCAATGGAAATTGATCTGTCCCTGAAGATAGATGATGAAGGAGAAGGAGATGGAGAAGGAGAGGAAGAAGCAGAAGGAGAAGAAGGAGATGAACAAGTGCAACGAGAAGATCAACAAAAGGAAAAGGAAACAGGTCATGTAGAAGATAAAGGAGAAGATGTGGAAGCTGCTTCATCTGTTGAAGAGAACTTGAAGACGGAAGAGTTATGTGTGTTACAGATGGAGATGAATCGAATGAAAGAGGAGAACAAAGTGTTGAGGAAGGTAGTAGAGGAAACAATGAAAGATTACCGTGATCTCCAAATGAAATTCGCTCTTATTCAACAGAATAAGCAAAACAAGGATCTCCAAATCTCCCTCTCCCTCCATGGCAAGGACAGAAATCTTCAAGATCCCAGGAGGATTTCCAAAGTCTTGAATATCAATGACCAAATCCTTCCATCATCACCCGAGGACAACGAAGAGAGCGAATTAGGGCTGTCTTTGAGGTTGAAACCCAATACAAGAGAAGAAAGAGAGGAAGATGGAGAAGCAAATAAGGAAGAAACTGTAAGCTTTACACCCATACCAAATAGGCTACCTAGGACTGACTTGGCTGCAATCAAAAGCCACGCTGCTTCCCCACCCAACAGAAAAGCTAGGGTTTCAGTCAGAGCAAGATGCCAAACAGCCACAATGAACGATGGCTGCCAATGGAGAAAATATGGGCAGAAAATCGCGAAAGGAAACCCTTGCCCACGAGCCTACTATCGTTGCACCGTTGCCCCAGGATGCCCAGTTAGAAAACAGGTTCAAAGATGCTTAGAGGACATGTCAATACTCATAACCACCTATGAAGGAACACATAACCATCCACTCCCTGTGGGTGCAACAGCGATGGCTTCAACAACTTCTGCAGCAGCCTCCTTCATGTTAGTAGATTCAAGCAATCCTCTTTCAGAAGCCTCCCTTTCTTACCCTAATTCCCATTTCATAAACCCGGGTTCTTCATCATCGATGATCAGAAGCATAAACCCTAATGACCCTTCTAAAGGGATTGTCCTTGACCTCACCAACACTACCCCTTCTGATCCACAACAATTCCCACTGCAAAGCTCCTCACACTCATCCGCCCAATTAGGTTTCAGTTGGATGCCTAGCAAACCAAGCTACCATAGTGGTGGTAGTACCAATATTGCCAACAATCTTTTTCCTAACCCTAGAGCAGCTGAAGAAGACAGGTCCATAGCTGAAAATGTGACTGCAATCACTTCCAATCCCGACTTTAGGGTTGCGGTTGCGGCTGCAATCACTTCCTTCATCAACAAAGAAAGCCATACGAGTACTCACACCACAGGGCCTCCATTTGCTAACCCAAGGGATGGCGAGGGTGGTGGTGGGTCTAGTGGCAACAACTGGGTTCTTGAATCTCTCCCTGCTAGTGTTAAGCCCTACCGGCATTCACCATGA	1464	0.4556	MREGRPMEIDLSLKIDDEGEGDGEGEEEAEGEEGDEQVQREDQQKEKETGHVEDKGEDVEAASSVEENLKTEELCVLQMEMNRMKEENKVLRKVVEETMKDYRDLQMKFALIQQNKQNKDLQISLSLHGKDRNLQDPRRISKVLNINDQILPSSPEDNEESELGLSLRLKPNTREEREEDGEANKEETVSFTPIPNRLPRTDLAAIKSHAASPPNRKARVSVRARCQTATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTTSAAASFMLVDSSNPLSEASLSYPNSHFINPGSSSSMIRSINPNDPSKGIVLDLTNTTPSDPQQFPLQSSSHSSAQLGFSWMPSKPSYHSGGSTNIANNLFPNPRAAEEDRSIAENVTAITSNPDFRVAVAAAITSFINKESHTSTHTTGPPFANPRDGEGGGGSSGNNWVLESLPASVKPYRHSP*	488

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi12g0974	487	Coils	Coil	81	101	-	-
	Vvi12g0974	487	MobiDBLite	consensus disorder prediction	442	487	-	-
	Vvi12g0974	487	MobiDBLite	consensus disorder prediction	150	196	-	-
	Vvi12g0974	487	MobiDBLite	consensus disorder prediction	38	67	-	-
	Vvi12g0974	487	FunFam	probable WRKY transcription factor 31	216	293	-	-
	Vvi12g0974	487	SUPERFAMILY	WRKY DNA-binding domain	224	292	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0974	487	Pfam	WRKY DNA -binding domain	232	290	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0974	487	ProSiteProfiles	WRKY domain profile.	226	292	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0974	487	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	50	443	IPR044810	GO:0003700
	Vvi12g0974	487	Gene3D	WRKY domain	216	293	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0974	487	MobiDBLite	consensus disorder prediction	161	186	-	-
	Vvi12g0974	487	SMART	WRKY_cls	231	291	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0974	487	MobiDBLite	consensus disorder prediction	1	18	-	-
	Vvi12g0974	487	MobiDBLite	consensus disorder prediction	1	67	-	-
	Vvi12g0974	487	MobiDBLite	consensus disorder prediction	19	37	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi12g0974	Vvi-Chr12	13065135	13067116	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi12g0974	26	350	WRKY Transcription Factor Family	AT1G68150	45.723	4.52e-85	265

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vvi12g0974		WRKY	2e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi12g0974	-		-	vvi:100264153	932.169