Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0936 ATGAATGTTGTCTATAAAATACTGCAATATCTCAAAGGAACCCCAAGAAAAGGACTTCACTTTGGAAAGCATGACCAATTCAAAATAGAGGCCTTTACGGATGCAGATTGGGCAGGGTCTATAGAAGATAGGAGGTCAACATCTGGCTACTGTACATTTGTGTTTGGAAATCTCATCACATGGAGAAGTAAAAAGCAAAATGTGGTAGCTAGAAGTAGTGCTGAAGTTAAGTTTAGATCAATAGCTCATGGAATTTGTGAAGTCTTGTGGATCAAGAGAGTATTAGAAGAACTAAAGATTACAATTCATCCTTTAGCTATGATTCATAACCCCAGCGAAGTAGTGGTTGCAGATTTTGGGCTGGCTAAACTCGTGGACTACAGGGATACTCATGTTACCACGGCTGTACATGGAACACTTGGGCATATTGCCCCAGAGTACCTCTTCACTGGAAGGTCTTTGGAGAAGACTGATGTTTACGGATATGGGATCATGCTTCTTGAGCTCATCACTGGGCAGAGGGCTTTTGATCTTGCCCGTTTGGCCAGCAATGAGAATGTTATGCTGCTGTCCCTAGTCAAGGAACTGTTGAACAACAAGAAATTGGAAACACTGGTTGATTCTAAGCTGCAGGGCTATTACATTGTAGAGGAGGTAGAGGAGCTAATCCAGGTGGCTCTCCTTTGCACACTAAGCACAGCTTCAGACCGACCCAAGATGTCAGATGTGGTTAAAATGCTTGAAGGTGATGGTTTGGCTGAAAGGTGGGAACAGTGGCAAAAGGAGGATATAATTTGCGGAGAGCAAAATCATAGCAACTTCCCCTCTAATAATTGGATTATAAATGACTCCACTCCAGGCCTTCATCCTGAAGAATTGTTCGGTCCCAGATGA 894 0.4295 MNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCTFVFGNLITWRSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEELKITIHPLAMIHNPSEVVVADFGLAKLVDYRDTHVTTAVHGTLGHIAPEYLFTGRSLEKTDVYGYGIMLLELITGQRAFDLARLASNENVMLLSLVKELLNNKKLETLVDSKLQGYYIVEEVEELIQVALLCTLSTASDRPKMSDVVKMLEGDGLAERWEQWQKEDIICGEQNHSNFPSNNWIINDSTPGLHPEELFGPR* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0936 297 CDD RNase_HI_RT_Ty1 30 109 - -
Vvi12g0936 297 Gene3D Transferase(Phosphotransferase) domain 1 95 267 - -
Vvi12g0936 297 Pfam Protein kinase domain 107 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0936 297 ProSiteProfiles Protein kinase domain profile. 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0936 297 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 111 258 - -
Vvi12g0936 297 SUPERFAMILY Protein kinase-like (PK-like) 108 252 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0936 Vvi-Chr12 12367794 12383059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0936 59 297 Receptor kinase-like Gene Family AT1G34210 56.904 1.52e-79 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vvi12g0936 Pkinase 3.9e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0936 K13416 - vvi:100243623 331.257