Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0920 ATGGTTGCAGAAACTCCCCTTTGGAGAAATGGGCCCCCTGAGAAACCTGTATTGTGCAATGCATGTGGATCAAGGTGGAGGATTAGGGGGACTCTTGAAGACTATATTCCCAAGCATGCTCTTGCTGTTATGACTAGCCATGCCAGAGACAGGACTCAAAATCCTCATCAACATAAGTTACCTCTTGAGAGAACATTTGTGAGTCACCCCAATATTATGGTTCATAATGAAAGCCACTCAGATACTAAAGAGAATGCTATAAGATATGATGACCCATATTCAAGTGGTTTGGGAGATAACGCAAGCCATAGAAGTAGTTCGGGGTCCTCTTCAATATCATGCTCTGATCATAGCCACACGGAGCTGCTGAGTTCAATCCCCTGCTCAAATAATTGGAACTCTAACGTTCCATCGAGAAAAAGGTCACTGGTTCAATACCGTAATCTAACATTTGTTGAAAAACTCCAGAAGGACCTTTATGATATTCTACAAAATGAAGAGCCTACTACTTTGTCTGAGTGCCCAGATGGGAATCTCATCTATTATGAAAATAGTGGTAATCCTGAAATCGGTCTGGGAGTGCTTCTGCTAAAACCGCCTATCGTTTCGGCTCAGCAAGAATCTAAGACATTTAAAAGTGAAGGTAAGATGACCTCCTCATCTTGGCAAGTGTCAAGCCTCTTTTTCCTATTTGTGTATCTGTTTTTTATGAGTTCACACTTGGTTAGTCCAATAGTTAGGAATGACACAAAACAAAGCTTCAAAATTATTCCTGTTTAA 780 0.409 MVAETPLWRNGPPEKPVLCNACGSRWRIRGTLEDYIPKHALAVMTSHARDRTQNPHQHKLPLERTFVSHPNIMVHNESHSDTKENAIRYDDPYSSGLGDNASHRSSSGSSSISCSDHSHTELLSSIPCSNNWNSNVPSRKRSLVQYRNLTFVEKLQKDLYDILQNEEPTTLSECPDGNLIYYENSGNPEIGLGVLLLKPPIVSAQQESKTFKSEGKMTSSSWQVSSLFFLFVYLFFMSSHLVSPIVRNDTKQSFKIIPV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0920 259 CDD ZnF_GATA 2 31 IPR000679 GO:0006355|GO:0043565
Vvi12g0920 259 Gene3D - 2 60 IPR013088 GO:0006355|GO:0008270
Vvi12g0920 259 MobiDBLite consensus disorder prediction 76 114 - -
Vvi12g0920 259 Pfam GATA zinc finger 3 31 IPR000679 GO:0006355|GO:0043565
Vvi12g0920 259 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 34 - -
Vvi12g0920 259 MobiDBLite consensus disorder prediction 98 114 - -
Vvi12g0920 259 PANTHER OSJNBB0038F03.10 PROTEIN 4 225 IPR044589 -
Vvi12g0920 259 SMART GATA_3 2 48 IPR000679 GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0920 2 200 C2C2-Gata Transcription Factor Family AT4G17570 39.535 6.56e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi12g0920 GATA 3.2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0920 - - vri:117925964 421.394