Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0912 ATGGCCGAGGCCCTTGTGGGAGGAGCAGTTCTGTCAGCTTCCCTCCAAGTTTTGTTTGATAAGATGGCTTCTTGGGAGGTCCTAGATTTTTTCCGGGGACGGAAACTCAATGATGCCCTCCTAATGAAGATGAAGATAGTCTTGCTGACAGTCCATGCCGTGATCAATGATGCGGAGGAGAAGCAAATTACAAATCCAGCAGTCAAAGAGTGGCTCGATGAACTTAAGGATGCTGTATATGATGCGGAGGACCTGCTGGATGAGATGGCCACTGAAGTTTTGAAATCCCAGATGGAAGCGGAATCTAAAATACCTATAAACCAGGTATGGAATTTGATCTCAGCTTCTTTCAATCCTTTTAACAAGAAGATAGAGTCCAGGGTGAAGGAAATCATTGAAAGACTACAAGTTTTTGCAAACCAAAAAGATGTCCTCGGCCTGAAAAGCGGTGGGGAGATCAAAACTCAGCAAAGGCGGCATACAACTTCATTAGTAGATGAAGATGGTATATATGGTAGGGAAGATGATAAAGAGAAGATACTAGAGCTGCTTCTGTCTGATGATGCAAGCCACCGTGATTTAAATGTGATTACCATAGTTGGCATGGGAGGGGTTGGCAAGACAACCCTTGCTCAGCTTCTATACAATAATAGAAAAGTGGCTGGATATTTTGATCTGAAAGCATGGGTTTGGGTTTCCCAAGAATTTGATGTTTTCAAGATAACCAAAACAATTCTCGAGTCATTCACTTGTAAGACTTGCGGGCTTGATGATCCAACTTTACTTCAAGTTGAATTGAGAGAGATCCTGATGAGAAAGAAATTTCTACTTGTCTTGGATGATATTTGGAATGAGGACTATTGTAGCTGGGATTTGCTACGAGGGGCTCTCAGATATGGGGCAAGTGGAAGTAAAATCATTGCAACAATGCGCAGTAAGAAAGTTTCATCAATCATGCACCCAATTCATACTCACCATCTAGAGCTGTTATCATATGAAGATTCTTGGCTGCTATTTGCAAAACATGCATTTTCAAATGAAGACACCTGTGCACATCCGACTCTTAAAGCAATTGGAGAGAAAATTGTTGAAAAGTGCAATGGTTTGCCTTTAGCTGCAAAAACAATTGGGGGTCTCTTGAAATCTGAAACAGACACCAAGGACTGGAATCAAGTCTTGAATAGTGAGATATGGGATTTTCCAAACAATGGCATTCTTCCAGCTTTAAGACTTAGCTATCATTATCTTCCTGCGCATCTAAAGCCCTGTTTTGCCTATTGCTCCCTTTTCCACAAGAATTATGAATTTGACAAGGAGACATTGGTTCGATTATGGATTGCAGAAGGTTTCGTGCAGCAGCCAAAAGCAGAGGAAAGAATTGAAGTGGTAGGGAATGGGTACTTTACTGATCTGCTTTCAAGGTCATTGTTTCAACAGTCGGGTGGCAATGAATCACGCTTTATAATGCACGAACTCATTAATGGTTTAGCTAAATTTGTGTCCGGAGAATTTTCTTTCTCATTAGAGGATGAAAACCAACAAAAAATCTCCCGGAAGACTCGTCACATGTCATATTTTAGAGGAAAATATGATGCCTCTAGGAAGTTTAGGCTCCTCTATGAAACTAAGCGTTTGAGGACCTTTCTTCCACTTAACCTGCCACCACATAATGATCGTTGCTACTTAAGTACTCAGATAATATTTGATCTGGTGCCAATGCTAAGATGCTTACGAGTACTGTCTCTGTCTCATTATAAGATCACGGAGTTGTCAGATTCAATTGGCAATTTGAGAAAACTGGCCTACTTGGACCTGTCATATACCGGACTTCGAAATTTACCAGATTCAACATGCAATCTGTACAACTTACAAACATTGTTGTTGTCAAATTGTTGTTCTCTTTCTGAGTTGCCTGCAAACATGGGGAAATTAATCAACCTGCGCCACCTTGATATTAGTCAAACAAACGTTAAAGAGATGCCAACACAAATAGGTAGATTAGGGAGTCTTCAGACCTTGTCTACTTTTGTTGTTGGAAAACATAGTGGAGCCAGGATTAAAGAGTTGGGGGTTCTTCGAAACCTTTGGCGGAAACTTTCCATTTTAAGTCTTCAAAACGTGGTGCTTACTATGGATGCCCATGAGGCGAATTTGGAGGGGAAAGAACATCTCGATGCATTGGCTTTGGAATGGAGTGATGACACCGATGATTCACAAAATGAAAGGGTTGTACTTGAGAATCTAAAGCCTCATTCAAAACTGAAAGAACTCAGCATCAAATTTTACGGAGGTACAAGATTTCCAGATTGGTTGGGGGACCCTTCGTTCTCAAATCTTCTGGCGCTATGCCTTTCTGATTGTAAATATTGCTTGTCTTTGCCTCCCCTTGGGCAGCTTCCCTCTCTTGAAAAGCTCTATATTGTTGGTGCCAATTCAGTTAAGAAGGTGGGTCTTGAGTTCTATGGACATGGTTCTTCCTCATGTAAGCCATTTGGATCCTTGAAGACTCTAGTGTTTGAGAAAATGATGGAGTGGGAGGAATGGTTTATTTCTGCAAGTGATGGCAAAGAGTTCCCTAGTCTCCAGGAGCTTTATATAGTGAGGTGCCCTAAATTGATAGGGCGCTTACCCAGCCACCTTCCCTGTTTAACAAGGTTAGAAATCACTGAATGCGAGAAACTTGTGGCTTCACTTCCAGTGGTTCCAGCTATACGGTATATGTGGTTAAGTAAATGTGATGAGATGGTAATAGACCAAAGAAGTGATGATGCTGAACTCACCTTACAATCCTCCTTCATGCATATGCCTACACATTCAAGCTTTACATGCCCATCTGATGGTGACCCAGTTGGATTGAAACACCTCTCTGACCTTGAAACATTGTGTATCTCCAGTCTTTCACATGTCAAAGTATTTCCACCAAGGCTACACAAACTCCAAATTGAAGGACTAGGTGCTCCCGAGTCCTTGCCTGAGGGAATGATGTGCAGAAACACATGTCTTGTACATTTGACCATCTCCAATTGTCCATCTCTTGTGTCCTTTCCTATGGGTTGTGGGGGCCTACTCACTACATTGAAAGTTCTATATATCCATAATTGTAGAAAATTGGAGCTCCCCCTATCTGAGGAGATGATACAACCACAGTACTCATCTCTTGAAACTCTGAAGATAGAGAGGAGCTGTGATTCTCTCAGGTGCTTTCCATTGGGCTTCTTCACCAAGCTTATTCATCTTCATATTGAAAAATGTAGGCATCTGGAGTTCCTTTCAGTTCTAGAGGGACTTCACCATGGGGGTCTCACAGCACTTGAGGCATTCTACATCCTCAAATGCCCTGAGTTCAGATCTTTTCCTCGAGGAGGATTGCCTACTCCCAACCTTAGATGGTTTGGAGTCTACTACTGCAAGAAGCTCAAGTCCCTGCCCAATCAAATGCATACTCTCCTTACATCTCTTCAAAGCTTTGAAATATTTGATTGTCCACAGCTTTTATCATTCCCTGAAGGAGGTTTACCCTCAAGCCTATCCGAACTTTCAATCTGGAGTTGCAACAAACTAATGACCTGTAGAACAGAATGGGGCTTGCAAAGACTTGCCTCTCTTAAGCATTTCAGTATCAGCGAAGGATGTGAAGGAGACTGGGGAGTGGAGTCATTTTTGGAGGAATTGCAGCTACCCTCCACTCTCACTTCCCTGCGCATCTACAATTTCGGCAACCTTAAATCCATTGATAAGGGTTTACGACACCTCACTTCTCTTAAAAAATTGAAGCTTTTTAACTGTCCCGAGCTCCGCTCCTTGCCAGAAGTGGAGGCGCTGCCACCCTCCCTTTCTTTTCTGAACATCCAGGAATGTCCTCTGATAAATCTGGCCAAGATTGCTCAGGTCCCATTTGTCAAGATAGATGACCAGCTGATTGGTTGA 3927 0.4232 MAEALVGGAVLSASLQVLFDKMASWEVLDFFRGRKLNDALLMKMKIVLLTVHAVINDAEEKQITNPAVKEWLDELKDAVYDAEDLLDEMATEVLKSQMEAESKIPINQVWNLISASFNPFNKKIESRVKEIIERLQVFANQKDVLGLKSGGEIKTQQRRHTTSLVDEDGIYGREDDKEKILELLLSDDASHRDLNVITIVGMGGVGKTTLAQLLYNNRKVAGYFDLKAWVWVSQEFDVFKITKTILESFTCKTCGLDDPTLLQVELREILMRKKFLLVLDDIWNEDYCSWDLLRGALRYGASGSKIIATMRSKKVSSIMHPIHTHHLELLSYEDSWLLFAKHAFSNEDTCAHPTLKAIGEKIVEKCNGLPLAAKTIGGLLKSETDTKDWNQVLNSEIWDFPNNGILPALRLSYHYLPAHLKPCFAYCSLFHKNYEFDKETLVRLWIAEGFVQQPKAEERIEVVGNGYFTDLLSRSLFQQSGGNESRFIMHELINGLAKFVSGEFSFSLEDENQQKISRKTRHMSYFRGKYDASRKFRLLYETKRLRTFLPLNLPPHNDRCYLSTQIIFDLVPMLRCLRVLSLSHYKITELSDSIGNLRKLAYLDLSYTGLRNLPDSTCNLYNLQTLLLSNCCSLSELPANMGKLINLRHLDISQTNVKEMPTQIGRLGSLQTLSTFVVGKHSGARIKELGVLRNLWRKLSILSLQNVVLTMDAHEANLEGKEHLDALALEWSDDTDDSQNERVVLENLKPHSKLKELSIKFYGGTRFPDWLGDPSFSNLLALCLSDCKYCLSLPPLGQLPSLEKLYIVGANSVKKVGLEFYGHGSSSCKPFGSLKTLVFEKMMEWEEWFISASDGKEFPSLQELYIVRCPKLIGRLPSHLPCLTRLEITECEKLVASLPVVPAIRYMWLSKCDEMVIDQRSDDAELTLQSSFMHMPTHSSFTCPSDGDPVGLKHLSDLETLCISSLSHVKVFPPRLHKLQIEGLGAPESLPEGMMCRNTCLVHLTISNCPSLVSFPMGCGGLLTTLKVLYIHNCRKLELPLSEEMIQPQYSSLETLKIERSCDSLRCFPLGFFTKLIHLHIEKCRHLEFLSVLEGLHHGGLTALEAFYILKCPEFRSFPRGGLPTPNLRWFGVYYCKKLKSLPNQMHTLLTSLQSFEIFDCPQLLSFPEGGLPSSLSELSIWSCNKLMTCRTEWGLQRLASLKHFSISEGCEGDWGVESFLEELQLPSTLTSLRIYNFGNLKSIDKGLRHLTSLKKLKLFNCPELRSLPEVEALPPSLSFLNIQECPLINLAKIAQVPFVKIDDQLIG* 1309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0912 1308 SUPERFAMILY L domain-like 928 1290 - -
Vvi12g0912 1308 Gene3D - 412 498 IPR036388 -
Vvi12g0912 1308 Coils Coil 121 141 - -
Vvi12g0912 1308 PRINTS Disease resistance protein signature 366 380 - -
Vvi12g0912 1308 PRINTS Disease resistance protein signature 196 211 - -
Vvi12g0912 1308 PRINTS Disease resistance protein signature 618 634 - -
Vvi12g0912 1308 PRINTS Disease resistance protein signature 269 283 - -
Vvi12g0912 1308 Pfam NB-ARC domain 173 394 IPR002182 GO:0043531
Vvi12g0912 1308 Coils Coil 72 92 - -
Vvi12g0912 1308 Gene3D Ribonuclease Inhibitor 556 925 IPR032675 -
Vvi12g0912 1308 Gene3D - 329 411 IPR042197 -
Vvi12g0912 1308 Gene3D - 35 137 - -
Vvi12g0912 1308 FunFam Probable disease resistance protein At1g63360 413 498 - -
Vvi12g0912 1308 PANTHER DISEASE RESISTANCE PROTEIN RP 47 892 IPR044974 GO:0006952
Vvi12g0912 1308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 427 IPR027417 -
Vvi12g0912 1308 SUPERFAMILY L domain-like 489 894 - -
Vvi12g0912 1308 Pfam Rx N-terminal domain 10 102 IPR041118 -
Vvi12g0912 1308 Gene3D Ribonuclease Inhibitor 1022 1171 IPR032675 -
Vvi12g0912 1308 Gene3D Ribonuclease Inhibitor 1172 1298 IPR032675 -
Vvi12g0912 1308 Gene3D Ribonuclease Inhibitor 937 1021 IPR032675 -
Vvi12g0912 1308 FunFam Probable disease resistance protein At1g61300 153 324 - -
Vvi12g0912 1308 Gene3D - 152 323 IPR027417 -
Vvi12g0912 1308 SMART LRR_typ_2 597 620 IPR003591 -
Vvi12g0912 1308 SMART LRR_typ_2 644 667 IPR003591 -
Vvi12g0912 1308 SMART LRR_typ_2 574 596 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0912 Vvi-Chr12 11524086 11528012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0912 577 673 WRKY Transcription Factor Family AT4G12020 39.796 3.71e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0912 - - vvi:100244934 2613.18