Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0894 ATGGGATCATTAGAGGAAAGAGCAGTGCTTGAGTTTGAGGACGAGAGTCTTTTTAGCCCAGACTCAGCTTCTAGAAAGACACATTCCCGGGAGGGTCCCCTGGTATTGGCGCCGTCTCCTGCTTCAGAAACTTCTGGTACTAAATGCATGAGTAATAGCATCTTCAATAGCATAAAGGTTGTGGTCTTCTCCACCAAAATCAACCTACTTGTGCCCTTTGGCCCCGCGGCAATTTTGGTGGATAAGTTTACTAACAATCACGGTTGGGTCTTCTTTCTTAGTTTACTGGGCATAATACCTCTGGCTGAGCGATTGGGTTATGCTACAGAGCAGTTAGCTTTGTTCACTGGTCCTACAGTTGGGGGTTTGTTAAATGCCACCTTTGGAAATGCCACAGAGTTGATAATATCAGTTTATGCACTGAAGAATGGCATGATACGTGTTGTTCAACAGTCATTATTGGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGATGTGCATTTTTCAGTGGAGGAATGGTTTTTTCTAAGAAGGAACAGGTGTTTAGCAAGGCAGCTGCTGGAGTGAACTCAGGGTTGCTGTTGATGGCAGTCATGGGGCTTCTGTTTCCAGCTGTCCTCCACTTCACTCACACTGAATTGCATTTTGGGAGTTCTGAGTTGGCCCTTTCAAGATTTAGTAGCTGCATTATGCTTGTGGCATATGCTGCCTATCTTGTTTTTCAGCTGAAGAGTCAGAAAAACCTTTATGTTCCAGTCGATGAGGGCGGGGACCAAACTGAAGGGGATGAAGATGAAGCTCCTGAAATTTCCAAGTGGGAATCCATAATATGGCTAACTATTTTGACTTTGTGGATTTCAGTCCTCTCAGAGTACCTAGTTAATGCCATAGAGGGGGCATCTGTTGCATGGAAAATGCCAATTGCATTTATTAGTGTTATCCTGCTCCCAATTGTTGGGAATGCAGCAGAGCATGCAAGTGCAATTATATTTGCCATGAAAGACAAACTTGACATTTCCTTGGGAGTGGCAATAGGCTCATCAACACAAATATCGATGTTTGGGATTCCCTTCTGTGTGGTTGTTGGGTGGATCATGGGACGTCCTATGGACTTGAATTTTCAGCTTTTCGAGACAGCCACCCTTTTCATGACTGTCATAGTTGTGGCCTTCATGTTGCAGGAGGGAACTTCCAACTATTTTAAAGGAATAATGCTCATCTTTTGCTATCTGATAGTTGCTGCAAGTTTCTTTGTACATATTGATCCAACTTCTATAGGTGAGTTACTGTTCACCAGCGATAAAAAGAAGAAAGAAAAAATGACTGGGAGAGGTGCAAGAGAGAGGTTTCGAAGGGATTACCCTCCGAGATTTGAAGAGAAGAGCCACTCTGGGCGGAGCAGTCACCCCCCATCGAGACACTTATGGGTTGGAAACCTATCGCACAGCATTTCTGAGAACACTCTCACTGATCCTTTTCTACAGTTCGGAGAGCTCGACACTGTCGCTTTTCAGCCGGGTCGTAGCTATGCTTTCATTAATTTCAAGCAGGAAGAAGATGCCATTCATGCCATGAGATCACTTCAAGGTTTTTCTGTGGCTGGCATGCCTCTTAAAATTGAGTTTGCAAAGGCGGAGAAGTCATCAACAGCATCACGTGATGAAGACTACCTGCAACGACGGGATGAACAACGGTCCACAATAAGAGGATCTCCATTCTCTCAAAGGGACTCAAGAACACGTCATGGTAGTCCTGACACATTTTATCCTGACAAGTCTAGTATCAGTGATAGAAAGGGAGAGCCTTGTGAGGTTTTATGGATAGGATTTCCCTCCTTACTGAAGGTGGATGAAACGATTTTAAGGAAGGCCTTTTCACCATTTGGTGAGATTGAGAAGATTACTTCATTCCCAGGTCGTAGTTATGCCTTTGTCCAATTCAGGAGTGTGACGGCAGCTTGCAGGGCAAAAGAAACTCTTCAGGGGAAGTTATTTGGCAATCCCCGTGTGCATATTTGTTTTGCAAAGAGTGAACCTGGTCCATCAAACGGTGGAAGGAATACAATGAATGCCCCTCCATCCCCACATTTTCAGTCCAATAGTCGCCCTGGATCTTCTGAAAATTTCCGGCAAGAGAGGAATTTTGGGAACTTCCCTGGAGATCCCAGTGTCAGATCTCCTCGTTTCATCTCAAATTTGGAGACCGAAGATTCTGATGTCATTGATTTTGGTAGGAAGAGTACTTTATGGACAGATGGAAATGGTACATTTGAACATAGGAGGTTCCGAGACATGGGATCTGAACTAGGAGCATCAGCAGACGTATATGAGCATCACAGTAGTCCTACAAGAGACAGGGTTGCTCACTTTCGTGATTTTTCTCCCCAGAAATTTCCTCGGAGAAGTCCCTTCTATGAAGATCCATGGGACTTGCCAGAAGATGCCTACCTATTTCATGGAGCAAAGAAACTAAAAACTGGCTCCTTCCCTCCTGAGAAAGAGCTTCCAGAGTATCCTTTCTCTGTTGCAGAACAAGAGAAGCATTTACTGCCAAGAATATTTTCTGACTATCCCCAACCTGAGGCCATTGATAAAAACTATGAGCCTGGATCGTTTGGGTATAAACAGATGTCTGATCACCCAATGAATCTGACCCGTCCTCATGGGGAAATGAGTGAACAGTGGAAAGCATCCTATGATGGTTTTCAGGTAGGTTCTGGTTCTTTGTCTTCAAACCCTGTTGATTGGAAAAGATTAACTCCTGAATCACATCCATCTTCTTTGAGTGGGGAGTGGAAATGGGAAGGGACCATAGCAAAGGGAGGATCTTCCATCTGTCGTGCTCGCTGCTTTCCTGTGGGAAAGGTCATGGACATCATGTTGTAA 2889 0.4451 MGSLEERAVLEFEDESLFSPDSASRKTHSREGPLVLAPSPASETSGTKCMSNSIFNSIKVVVFSTKINLLVPFGPAAILVDKFTNNHGWVFFLSLLGIIPLAERLGYATEQLALFTGPTVGGLLNATFGNATELIISVYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFSGGMVFSKKEQVFSKAAAGVNSGLLLMAVMGLLFPAVLHFTHTELHFGSSELALSRFSSCIMLVAYAAYLVFQLKSQKNLYVPVDEGGDQTEGDEDEAPEISKWESIIWLTILTLWISVLSEYLVNAIEGASVAWKMPIAFISVILLPIVGNAAEHASAIIFAMKDKLDISLGVAIGSSTQISMFGIPFCVVVGWIMGRPMDLNFQLFETATLFMTVIVVAFMLQEGTSNYFKGIMLIFCYLIVAASFFVHIDPTSIGELLFTSDKKKKEKMTGRGARERFRRDYPPRFEEKSHSGRSSHPPSRHLWVGNLSHSISENTLTDPFLQFGELDTVAFQPGRSYAFINFKQEEDAIHAMRSLQGFSVAGMPLKIEFAKAEKSSTASRDEDYLQRRDEQRSTIRGSPFSQRDSRTRHGSPDTFYPDKSSISDRKGEPCEVLWIGFPSLLKVDETILRKAFSPFGEIEKITSFPGRSYAFVQFRSVTAACRAKETLQGKLFGNPRVHICFAKSEPGPSNGGRNTMNAPPSPHFQSNSRPGSSENFRQERNFGNFPGDPSVRSPRFISNLETEDSDVIDFGRKSTLWTDGNGTFEHRRFRDMGSELGASADVYEHHSSPTRDRVAHFRDFSPQKFPRRSPFYEDPWDLPEDAYLFHGAKKLKTGSFPPEKELPEYPFSVAEQEKHLLPRIFSDYPQPEAIDKNYEPGSFGYKQMSDHPMNLTRPHGEMSEQWKASYDGFQVGSGSLSSNPVDWKRLTPESHPSSLSGEWKWEGTIAKGGSSICRARCFPVGKVMDIML* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0894 962 MobiDBLite consensus disorder prediction 453 468 - -
Vvi12g0894 962 Pfam Sodium/calcium exchanger protein 89 244 IPR004837 GO:0016020|GO:0055085
Vvi12g0894 962 Pfam Sodium/calcium exchanger protein 277 416 IPR004837 GO:0016020|GO:0055085
Vvi12g0894 962 MobiDBLite consensus disorder prediction 453 473 - -
Vvi12g0894 962 SUPERFAMILY RNA-binding domain, RBD 462 553 IPR035979 GO:0003676
Vvi12g0894 962 NCBIfam calcium/proton exchanger 70 419 IPR004798 GO:0006816|GO:0015369
Vvi12g0894 962 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 13 424 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vvi12g0894 962 SMART rrm1_1 606 674 IPR000504 GO:0003723
Vvi12g0894 962 SMART rrm1_1 475 542 IPR000504 GO:0003723
Vvi12g0894 962 MobiDBLite consensus disorder prediction 677 729 - -
Vvi12g0894 962 FunFam RNA recognition motif (RRM)-containing protein 455 570 - -
Vvi12g0894 962 NCBIfam calcium/proton exchanger 54 419 - -
Vvi12g0894 962 Gene3D - 118 255 IPR044880 -
Vvi12g0894 962 Gene3D - 264 420 IPR044880 -
Vvi12g0894 962 FunFam Vacuolar cation/proton exchanger 264 420 - -
Vvi12g0894 962 CDD RRM_SF 476 542 - -
Vvi12g0894 962 MobiDBLite consensus disorder prediction 20 46 - -
Vvi12g0894 962 MobiDBLite consensus disorder prediction 682 714 - -
Vvi12g0894 962 MobiDBLite consensus disorder prediction 552 568 - -
Vvi12g0894 962 FunFam RNA recognition motif (RRM)-containing protein 591 684 - -
Vvi12g0894 962 Gene3D - 459 569 IPR012677 -
Vvi12g0894 962 SUPERFAMILY RNA-binding domain, RBD 595 680 IPR035979 GO:0003676
Vvi12g0894 962 FunFam Vacuolar cation/proton exchanger 118 257 - -
Vvi12g0894 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 474 546 IPR000504 GO:0003723
Vvi12g0894 962 MobiDBLite consensus disorder prediction 552 599 - -
Vvi12g0894 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 476 539 IPR000504 GO:0003723
Vvi12g0894 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 617 670 IPR000504 GO:0003723
Vvi12g0894 962 Gene3D - 592 683 IPR012677 -
Vvi12g0894 962 MobiDBLite consensus disorder prediction 576 599 - -
Vvi12g0894 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 605 678 IPR000504 GO:0003723
Vvi12g0894 962 CDD RRM_SF 616 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0894 Vvi-Chr12 10215103 10235566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0894 4 424 Antiporters AT1G55730 72.365 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0894 - - vvi:100249524 1080.86