Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0890 ATGGCTGTAGGTTTTTGGTTTGTTCTTTTAGTTGGTCTGGTTGGGCTTGTCTTGGGTCTCATCTTGAACCACTTTCTGCCCTTGTTCTTCAAGCTTGGGCATGTCCCTAAAGGGACTTTTGGGTGGCCTCTACTGGGTGAAACCCTTTGTTTTTTGAAGCCTCACCCTTCTAATTCTCTTGGTGCATTTCTTCAAGACCGTTGTTCTAGGTTTGGCAAAGTGTTCAAATCCCACTTGTTCTTCTCTCCAACTGTGGTATCTTGTGACCAGGAGCTCAACTACTTCATACTTCAGAATGAAGACAAGTTGTTCCAGTGCAGTTATCCAAAGCCCATCCATGGTATTCTCGGGAAGATTTCCATGCTGGTGGCGGTAGGCGACACCCACAAGAGGCTCAGAAACGTGGCTCTCTCACTGGTCACCACTACAAAAACAAAGCCTGAGTTTCTCAACGAGGTGGAGAGGGCGGCCATTCGGGTTCTTGATTCCTGGAAAGATAAACCACAAATCATCTTCTGTGAAGAGGCTAGAAAGTTCACATTCAATGTAATAGTAAAGCAGGTCTTAGGCTTGACACCAGATGATCCACAGACTGCTAAAATTCTTCAAGATTTCCTCACTTTTATGAGAGGACTCATATCTCTCCCACTCTATATTCCCGGAACTCCATACGCAAGAGCTGTTCAGGCTAGAATTAGGATATCTTCTACTGTCAAAGCAATTATAGAGGAAAGAAGAAGAGATGCTGAGAATTCTAGCAAAAGGGATGATTTCCTTGAGATCCTTTTATGTGTTGATACCTTATCAGAAGATGAAAAAGTGAGCTTCGTTTTGGATTCTCTACTGGGTGGCTATGAAACTACCTCTCTCTTAATGGCCTTGGCTGTGCATTTTCTGGGTAAATCACCCACTGCACTGGAACAGTTAAAGCTGGAGCATCAGAAGATAAGAAGCATGAAGCAGAAAGATGACTATTTGAACTGGGATGATTATAAGCGAATGGATTTTACTCAAAATGTCATTCATGAAGCTCTCAGATGTGGCAATGTCGTGAAGTTTGTGCACAGAAAGGCTCTCAAAGATGTCAAATTTAGAGATTATCTAATTCCATCTGGTTGGAAGGTCCTACCAGTTTTCAGTGCAGTTCATTTGGACCCATCTCTCCATGCAAGTGCTCTCCAGTTCCATCCATGGAGATGGGAGGGCCGAGATCAAACATGCAAGAAATTTACTCCCTTTGGTGGAGGGTCAAGATGCTGCCCCGGATCTGAGCTTGCTAAGATACAGGTTGCCTTCTTCCTCCACCACCTTGTACAGAATTTCAGATGGAATACCAAGGATGGTGATCAACCCTTTGCATATCCATATGTTGAATTCCAGAGAGGATTGGCACTAAATTTGGATCACTGTTCCACCTGA 1419 0.4376 MAVGFWFVLLVGLVGLVLGLILNHFLPLFFKLGHVPKGTFGWPLLGETLCFLKPHPSNSLGAFLQDRCSRFGKVFKSHLFFSPTVVSCDQELNYFILQNEDKLFQCSYPKPIHGILGKISMLVAVGDTHKRLRNVALSLVTTTKTKPEFLNEVERAAIRVLDSWKDKPQIIFCEEARKFTFNVIVKQVLGLTPDDPQTAKILQDFLTFMRGLISLPLYIPGTPYARAVQARIRISSTVKAIIEERRRDAENSSKRDDFLEILLCVDTLSEDEKVSFVLDSLLGGYETTSLLMALAVHFLGKSPTALEQLKLEHQKIRSMKQKDDYLNWDDYKRMDFTQNVIHEALRCGNVVKFVHRKALKDVKFRDYLIPSGWKVLPVFSAVHLDPSLHASALQFHPWRWEGRDQTCKKFTPFGGGSRCCPGSELAKIQVAFFLHHLVQNFRWNTKDGDQPFAYPYVEFQRGLALNLDHCST* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0890 472 SUPERFAMILY Cytochrome P450 35 450 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0890 472 CDD CYP90-like 67 463 - -
Vvi12g0890 472 PRINTS E-class P450 group I signature 272 289 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0890 472 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0890 472 PRINTS E-class P450 group I signature 410 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0890 472 PRINTS E-class P450 group I signature 420 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0890 472 PRINTS E-class P450 group I signature 338 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0890 472 PRINTS E-class P450 group I signature 378 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0890 472 PANTHER CYTOCHROME P450 26 35 446 - -
Vvi12g0890 472 Gene3D Cytochrome P450 31 467 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0890 472 FunFam Cytochrome P450 724B1 31 468 - -
Vvi12g0890 472 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 413 422 IPR017972 GO:0005506|GO:0016705
Vvi12g0890 472 PRINTS P450 superfamily signature 283 300 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0890 472 PRINTS P450 superfamily signature 411 420 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0890 472 PRINTS P450 superfamily signature 339 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0890 472 PRINTS P450 superfamily signature 420 431 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g0890 472 Pfam Cytochrome P450 36 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0890 Vvi-Chr12 10163051 10165706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0890 40 364 Cytochrome P450 AT5G14400 51.829 4.25e-123 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0890 K12639 - vvi:100257922 941.799