Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0879 ATGGGTTACATTTGTGATTTCTGTGGAGAACAGAGATCCATAGTGTATTGTAGGTCTGATGCTGCTAGCTTGTGTCTGTCATGTGATCGGCATGTCCATTCTGCTAATGCGCTTTCCAGGCGCCATTCCAGGACCCTTTTATGTGAAAGATGTAATTCTCAACCTGCATTTGTTAGATGTATCGAAGAGAAGATCTCTCTTTGTCAAAATTGTGATTGGACTGGCCATGGTGGATCTACTACCACTTCATCACATAAGAAGGAAACTATCAATTGTTACTCAGGCTGCCCTTCATCCGAAGGGCTTTCTACAATGTGGCCATTTGTTTTAGATTTGCCTTCTACAGGCAATTCCACTTGTGAGCAGGGTTTGAGTTTAATGTGCCTCAACGAGACCAGTGAGATGAACTCTTGGGGCCCTCCAGGAAATAGCAGTAGGCAAGACGCATCTCTCACAGTTGAAGTGAATGATGCTAATAATGTGGATAAGTCGAGCATATTGATTGGTTCCTCTTCAGTTCCTGAACTCAACTCTCCATCCCAAAAGTTAGACCAGCCATCTGGATCTGCTGATTTAACTTTGCCTAAGTTACTCTGTCCTGGAACAGATGATCTTGGGTTCTGTGAAGATGATAGTCTGTATGAGGACTTCAATATGGATGAAGTTGATTTGAATCTTGAGAACTATGAAGAACTCTTTGGTGTAGCTCTTAGCCACTCTGAACAGCTTTTTGAGAATGGTGGAATTGATAGCTTGTTTGGGAAAATGGACACATCCGGTGCTGATTCCCACTGTCAGGGTGCAGTTATAGCTGAGGGGTCGGTCGGACTAGCAAATGCAGTGCAGCCAACTTACAGCAATGCAGCATCTGCTGATTCCATAATGAGCTCTAAAACTGAACCAATCCTTTGTTTCACGGGAAAGCAAGCCCATTCCAGCCTGTCATTTTCTGGCCTCACTGGCGAGAGTAGTGCAGGAGACTATCAAGATTGTGGGGCTTCTCCAACATTTCTCATGGGGGAACCTCCATGGTGTCCCCCAGGACCTGAAAGCTCCTTGCCATCAACTAGCAGGAGTAGTGCTGTTATGCGTTACCGGGAAAAGAAGAAGAATCGCAAATTTGATAAAAGAGTGAGGTATGCTTCACGGAAGGCAAGGGCTGATGTTAGACAGCGTGTGAAGGGGCGCTTTGTCAAGGCTGGTGAAGCTTATGACTATGACCCAATAAGCGAAACCCGGAGCTTCTGA 1248 0.4535 MGYICDFCGEQRSIVYCRSDAASLCLSCDRHVHSANALSRRHSRTLLCERCNSQPAFVRCIEEKISLCQNCDWTGHGGSTTTSSHKKETINCYSGCPSSEGLSTMWPFVLDLPSTGNSTCEQGLSLMCLNETSEMNSWGPPGNSSRQDASLTVEVNDANNVDKSSILIGSSSVPELNSPSQKLDQPSGSADLTLPKLLCPGTDDLGFCEDDSLYEDFNMDEVDLNLENYEELFGVALSHSEQLFENGGIDSLFGKMDTSGADSHCQGAVIAEGSVGLANAVQPTYSNAASADSIMSSKTEPILCFTGKQAHSSLSFSGLTGESSAGDYQDCGASPTFLMGEPPWCPPGPESSLPSTSRSSAVMRYREKKKNRKFDKRVRYASRKARADVRQRVKGRFVKAGEAYDYDPISETRSF* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0879 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 403 - -
Vvi12g0879 415 MobiDBLite consensus disorder prediction 346 379 - -
Vvi12g0879 415 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi12g0879 415 MobiDBLite consensus disorder prediction 170 189 - -
Vvi12g0879 415 MobiDBLite consensus disorder prediction 365 379 - -
Vvi12g0879 415 Pfam CCT motif 358 400 IPR010402 GO:0005515
Vvi12g0879 415 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Vvi12g0879 415 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Vvi12g0879 415 CDD Bbox1_BBX-like 4 47 - -
Vvi12g0879 415 CDD Bbox1_BBX-like 47 87 - -
Vvi12g0879 415 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vvi12g0879 415 MobiDBLite consensus disorder prediction 170 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0879 Vvi-Chr12 10078174 10083118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0879 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.841 9.17e-155 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vvi12g0879 CCT 8.8e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0879 - - vvi:100254423 833.558