Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0877 ATGGGACTATCGAGTCTCCCAGCCCCATCTGAAGGAGTACTGTGTGTGCTTCTGGTGAACACAGCTCTCTCCATCTCCATCTTCAAGGGCATAGTCCGGGCCATCCTCCATGTCATTGGAATTCACCTCTCCGCAACCCCATCCTCCTCCGACTCCCCTGAACCCACCTCAGAGCCCTTTGAGTTTAGGCGGAACCCATCTGAGACCTGCATGGAGGAATTCAGGAGCAGGAACCCAGCAATCAGGTTTGACACAGTGTGCTCCTGCAAGCGCCCTGAACATGACTGTGCGGTTTGCTTGACTCGATTTGAACCAGACTCTGAGATAAATCACCTGCCTTGTGGCCATTTTTTTCACAAGGTTTGCTTGGAGAAGTGGCTGGACTATTGGAACATCACCTGCCCTCTGTGCAGGACTCCCTTAATGCCGGAAGAGGAAACATCTTGCTTTTGGTAA 456 0.5197 MGLSSLPAPSEGVLCVLLVNTALSISIFKGIVRAILHVIGIHLSATPSSSDSPEPTSEPFEFRRNPSETCMEEFRSRNPAIRFDTVCSCKRPEHDCAVCLTRFEPDSEINHLPCGHFFHKVCLEKWLDYWNITCPLCRTPLMPEEETSCFW* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0877 151 SMART ringv_2 95 138 IPR011016 GO:0008270
Vvi12g0877 151 SMART ring_2 96 137 IPR001841 -
Vvi12g0877 151 Pfam Ring finger domain 95 138 IPR001841 -
Vvi12g0877 151 PANTHER - 1 150 IPR044249 -
Vvi12g0877 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 143 IPR013083 -
Vvi12g0877 151 SUPERFAMILY RING/U-box 91 143 - -
Vvi12g0877 151 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0877 Vvi-Chr12 10070064 10070519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0877 1 145 C3H Transcription Factor Family AT2G04240 59.740 6.36e-56 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0877 K16285 - vvi:100244155 309.301