Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0874 ATGGACAAGATGAGAATTGAGAAGAGAATGGGAGATTCTGAGGAGGGGGAGATATGGACGCAGCAGAAGCGAACCCTAATTGATGGAGTGGCTGAGAGGCTATTGAATGGAGATCTGGATTCCAAAATACAAGCTGCCATTGACATCAGGAACATTCTCAGGAACTCCTCCGTCAAGACTCGTTCCAAGTTCACGGCCGCCGCCGACGTTATCCAACCCCTCGTCTCCTTGCTCCTCTCTCCCAACCAACACGCTGCTGAAGTCTCTCTTCTCGCTCTCCTCACTCTCGCCGCCAGGAACGAACGAAACAAAGTCAGGATAGTGACATCTGGGGCTGTTCCCCCTCTTGTTGAACTCCTCGAGTTCCAAAATGGTAGATTAAGGGAATTGGCGATTGCAGCAATCTTGACACTGTCTGCTGCTGCTCCCAACAAGCTGACCATTGCAGCTTCTGGAGCTGCACCTCTTCTGGTTCAGATTCTCAGCTCTGGAAGTGTTCAAGGAAAAGTTGATGCTGTCACAGCACTTCACTATCTGTCCAGCTGCACAGAGGCCACCACTCCAGTCATTGATGCTAGAGCTGTTTCCCCTCTCATAAAACTCCTCAAAGATTGCAAGAAGTATTCCAAATTTGCTGAGAAGACTACAGCCCTACTTGAAATCCTTTCTAAATCCGAAGAAGGGCAAACTGCAATTTCAAACTCAGATGGTGGAATCTTAACCCTAGTCGAGACCATTGAAGATGGATCTCTGGTGAGCACAGAACATGCAGTTGGAGCTTTGCTTTCCTTATGCCAGAGCTGCAGAAACAAATACAGGGAACTCATTCTAAAGGAAGGTGCAATTCCAGGCCTTTTACGACTCACTGTGGAGGGCACCCCAGAAGCCCAGGAGAGAGCCCGGATGCTCCTGGACCTGCTCAGGGATTCCCCACCAGAAAAGAGGCTGGCCTCATCAGTTTTGGAGAGAATTGCGTATGACATTGCTGCACGGGTTGATGGGTCGGATAAAGCTGCTGAAACTGCAAAGAGGTTACTGCAAGACATGGTTCACAGAAGCATGGAGCTCAGCCTGGGCCGTATCCAGCGCAGGGCTGCATCTTGTACACCTTCACAGATTCCCCCCACATGA 1131 0.4996 MDKMRIEKRMGDSEEGEIWTQQKRTLIDGVAERLLNGDLDSKIQAAIDIRNILRNSSVKTRSKFTAAADVIQPLVSLLLSPNQHAAEVSLLALLTLAARNERNKVRIVTSGAVPPLVELLEFQNGRLRELAIAAILTLSAAAPNKLTIAASGAAPLLVQILSSGSVQGKVDAVTALHYLSSCTEATTPVIDARAVSPLIKLLKDCKKYSKFAEKTTALLEILSKSEEGQTAISNSDGGILTLVETIEDGSLVSTEHAVGALLSLCQSCRNKYRELILKEGAIPGLLRLTVEGTPEAQERARMLLDLLRDSPPEKRLASSVLERIAYDIAARVDGSDKAAETAKRLLQDMVHRSMELSLGRIQRRAASCTPSQIPPT* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0874 376 Gene3D - 213 357 IPR011989 -
Vvi12g0874 376 Pfam Armadillo/beta-catenin-like repeat 143 181 IPR000225 GO:0005515
Vvi12g0874 376 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 237 IPR000225 GO:0005515
Vvi12g0874 376 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 111 153 IPR000225 GO:0005515
Vvi12g0874 376 SMART arm_5 141 181 IPR000225 GO:0005515
Vvi12g0874 376 SMART arm_5 99 140 IPR000225 GO:0005515
Vvi12g0874 376 SMART arm_5 182 224 IPR000225 GO:0005515
Vvi12g0874 376 SMART arm_5 57 98 IPR000225 GO:0005515
Vvi12g0874 376 SMART arm_5 225 266 IPR000225 GO:0005515
Vvi12g0874 376 SMART arm_5 269 326 IPR000225 GO:0005515
Vvi12g0874 376 Gene3D - 142 212 IPR011989 -
Vvi12g0874 376 Gene3D - 21 141 IPR011989 -
Vvi12g0874 376 PANTHER U BOX DOMAIN-CONTAINING 32 309 - -
Vvi12g0874 376 SUPERFAMILY ARM repeat 28 328 IPR016024 -
Vvi12g0874 376 FunFam U-box domain-containing protein 4 13 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0874 Vvi-Chr12 10048715 10051051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0874 17 309 U-box Gene Family AT2G23140 34.471 1.02e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0874 K08332 - vvi:100261296 703.36