Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0872 ATGGGTTCGAGGAAGGCTCCCAAAACTCACTCAGACGACGGAGCCAGTCCAGGAAAGATCTTCGTGGGAGGGCTAGCCAAGGAGACCAACTTGGATACTTTCACAAAGTATTTCGAGAAATATGGGGAGATAACCGATTCAGTGGTGATGAAGGATCGGCAAACGGGTCGGCCTAGGGGTTTTGGGTTTATTACATATGCTGATCCTTCTGTTGTTGACGAGGTCATTCAAGAGACCCATATCATCAACGGCAAACAAGTTGAGATCAAAAGAACCATTCCAAGAGGTTCCTCACAATCTAATGATTTCAAAACAAGGAAGATTTTTGTTGGTGGAATTCTAACAAGTGTCTCTGAAGATGAGTTCAAGAATTTCTTCTCAAAGTATGGGAAGGTGGTGGAACACGAGATTATACATGATCATGTGACCAAACGCTCCCGGGGATTTGGGTTCATTGTATTTGACAACGAACAGGTTGTTGATGATCTGCTGACAAATGGAAATATGATTGATATGGAGGGTACTCAGGTTGAGATCAAGAAGGCGGAACCAAAGAAATCCTCCTCAAACCCAGGTCGTGCTCCTTCATTTGGTGGTGATTCTAGGATGCAAATGTACAATGATGGTTTTAGTGGATACGGCAGCGATCCTTATAGTGGTCTGGGCAGTGGTGGCTATGGGCCTGCTTCCTACCGGGCACTAGGAGGTATTGACAGTAGGCTTGGTGATTATGGTGGGTATGGTGGCAGTGGCAGTGAATTTGGGGCCAGTTATGGGGGTTATGGTGGTGGTTATCGGGGAGAGTCCTCATTTGGCCCTTCCAGTCGCTATGGTTCCTATGATGTAGGGTTTGGAGGGGGTTATGGCGGAAGTGGATTTGGCGCATATGGCCGTGGAGGTGGAGGCTATGGGGGTTATGGCGGTTCAGGCTCCAGTGGTGGTTATGATGCAGGTCCTGGTGCTGGCTATGGAGGAGTAGGAGGAGTAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGACTATATGGAGGTAGAACAGGTTACAGTGGCAGCAGCCGATACCATCCTTACGGAAGATAG 1083 0.4866 MGSRKAPKTHSDDGASPGKIFVGGLAKETNLDTFTKYFEKYGEITDSVVMKDRQTGRPRGFGFITYADPSVVDEVIQETHIINGKQVEIKRTIPRGSSQSNDFKTRKIFVGGILTSVSEDEFKNFFSKYGKVVEHEIIHDHVTKRSRGFGFIVFDNEQVVDDLLTNGNMIDMEGTQVEIKKAEPKKSSSNPGRAPSFGGDSRMQMYNDGFSGYGSDPYSGLGSGGYGPASYRALGGIDSRLGDYGGYGGSGSEFGASYGGYGGGYRGESSFGPSSRYGSYDVGFGGGYGGSGFGAYGRGGGGYGGYGGSGSSGGYDAGPGAGYGGVGGVGGGGGGGGGGGGLYGGRTGYSGSSRYHPYGR* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0872 360 SMART rrm1_1 19 90 IPR000504 GO:0003723
Vvi12g0872 360 SMART rrm1_1 107 180 IPR000504 GO:0003723
Vvi12g0872 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Vvi12g0872 360 MobiDBLite consensus disorder prediction 180 200 - -
Vvi12g0872 360 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 226 - -
Vvi12g0872 360 PRINTS Eggshell protein signature 330 348 - -
Vvi12g0872 360 PRINTS Eggshell protein signature 304 314 - -
Vvi12g0872 360 PRINTS Eggshell protein signature 209 220 - -
Vvi12g0872 360 PRINTS Eggshell protein signature 279 294 - -
Vvi12g0872 360 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Vvi12g0872 360 SUPERFAMILY RNA-binding domain, RBD 93 195 IPR035979 GO:0003676
Vvi12g0872 360 Gene3D - 98 227 IPR012677 -
Vvi12g0872 360 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 9 360 - -
Vvi12g0872 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Vvi12g0872 360 Gene3D - 18 97 IPR012677 -
Vvi12g0872 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 168 IPR000504 GO:0003723
Vvi12g0872 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 81 IPR000504 GO:0003723
Vvi12g0872 360 SUPERFAMILY RNA-binding domain, RBD 11 98 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0872 Vvi-Chr12 10029164 10031466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0872 4 170 Eukaryotic Initiation Factors Gene Family AT1G71770 27.807 7.91e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0872 K12741 - vvi:100240900 481.485