Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0869 ATGGCCGAAGCTTGTAGAATGTTCCACACAGCTCTGACACTCACACTCCCTCCTTCTTTCTCTCAAACCCCATCTCGTCACTCTCAGCCCATCCCCCGGAGACACCCAATTCGGTGCTCAATATCCACCACCGACACCGCCAAAACCTCCGTGACCCAGAAGATCCCCTGGGGCTGCGAGGTGGATTCGTTGGAAAACGCAGCCTTGCTGCAGAAATGGTTGTCGGACTCGGGCCTCCCGCCCCAGAAAATGGGTATTGAAAGAGTTGAAGTCGGGGAGAGGGGGTTAGTTGCTCTCAAGAACATCAGGAAGGGGGAGAAACTGCTCTTTGTGCCTCCCTCACTCGTCATTACTGCAGACTCGGAGTGGAGCTGCACAGAGGCTGGTGAAGTGTTGAAACGGAATTCAGTACCAGATTGGCCATTGCTGGCAACCTACCTCATTGGTGAAGCAAGCTTTATGCAATCTTCAAGATGGAGCAATTATATCTCTGCCTTGCCTCGACAGCCCTATTCACTTCTGTACTGGACACGTGCTGAACTAGATAAGTATTTAGAAGCCTCGCAGATAAGAGAGCGTGCAATTGAAAGGATTAATGATGTTACTGGAACATACAATGATTTAAGGCTCAGGATATTTTCCAAGCATCCCCATTTATTTCCTGAAGAGGTATTCAATATGGAGACTTTCAAATGGTCATTTGGCATTCTTTTCTCACGATTGGTTCGTTTGCCCTCAATGGATGAAAAGATTGCCTTGGTTCCCTGGGCAGATATGCTGAATCATAGTTGTGAGGTTGAAACTTTTTTGGATTATGACAAATCATCACAGGGAGTTGTCTTTACAACTGACCGGACATATCAGCCAAGTGAGCAGGTTTTTATATCATATGGCAAGAAATCTAATGGAGAGTTGTTGCTATCATATGGATTTGTTCCAAGGGAAGGCACCAACCCTAATGATAAAGTTGAGTTGCTGTTGTCACTTAAGAAATCTGATAAATGTTATAAGGAGAAGTCGGAAGCTATGAAGAAGCATGGATTGTCAACATCTCAATGTTTCCCTATACAAATCACTGGTTGGCCTTTGGAGTTAATGGCCTATGCTTATTTAGTAGTCAGCCCCCCAAGTATGAGCCAACATTTTGAAGAGATTGCTGCTGTGGCATCAAATAAAACTACATCCAAAAAGGATATCAGATATCCTGAACTAGAGGAACAAGCACTGCAATTTATACTGGATAGTTGTGAAGCAAGCATATCAAAGTACAGCAAGTTCCTGCAGGAAAGTGGGTCTATGGATTTGGATGTAACATCTCCAAAGCAGCTAAACAGAAGAGTGTTTTTAAAACAGCTAGCTGTAGATTTGTGTACCAGTGAGCGGAGGATACTATTCCGCACCCAATATATACTCAGGAGGAGATTAAGAGACATAAGAAGCGGTGAACTGAGAGCTCTCAGAATCTTCGATGGCTTCAGGAAGCTCTTCAAATGA 1494 0.4444 MAEACRMFHTALTLTLPPSFSQTPSRHSQPIPRRHPIRCSISTTDTAKTSVTQKIPWGCEVDSLENAALLQKWLSDSGLPPQKMGIERVEVGERGLVALKNIRKGEKLLFVPPSLVITADSEWSCTEAGEVLKRNSVPDWPLLATYLIGEASFMQSSRWSNYISALPRQPYSLLYWTRAELDKYLEASQIRERAIERINDVTGTYNDLRLRIFSKHPHLFPEEVFNMETFKWSFGILFSRLVRLPSMDEKIALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRTYQPSEQVFISYGKKSNGELLLSYGFVPREGTNPNDKVELLLSLKKSDKCYKEKSEAMKKHGLSTSQCFPIQITGWPLELMAYAYLVVSPPSMSQHFEEIAAVASNKTTSKKDIRYPELEEQALQFILDSCEASISKYSKFLQESGSMDLDVTSPKQLNRRVFLKQLAVDLCTSERRILFRTQYILRRRLRDIRSGELRALRIFDGFRKLFK* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0869 497 PIRSF RMT_SET 1 494 IPR011192 GO:0009507|GO:0030785
Vvi12g0869 497 Pfam SET domain 94 298 IPR001214 GO:0005515
Vvi12g0869 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 328 494 IPR036464 -
Vvi12g0869 497 Gene3D set domain protein methyltransferase, domain 1 31 311 - -
Vvi12g0869 497 Gene3D - 317 486 IPR036464 -
Vvi12g0869 497 FunFam Rubisco methyltransferase family protein 317 480 - -
Vvi12g0869 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 58 433 - -
Vvi12g0869 497 ProSiteProfiles SET domain profile. 82 298 IPR001214 GO:0005515
Vvi12g0869 497 Pfam Rubisco LSMT substrate-binding 331 464 IPR015353 -
Vvi12g0869 497 CDD SET_RBCMT 77 312 IPR044431 GO:0016279|GO:0018022
Vvi12g0869 497 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 50 311 - -
Vvi12g0869 497 SMART set_7 82 304 IPR001214 GO:0005515
Vvi12g0869 497 SUPERFAMILY SET domain 69 314 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi12g0869 SET 1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0869 - - vvi:100247772 998.038