Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0846 ATGGCGGATTCAGACAACGACTCGGGTGGGCACAACAACAGCAACGCCAACAGCGAGCTGTCGGCGAGAGAGCAAGACCGATTCCTGCCGATCGCAAACGTGAGCCGGATCATGAAGAAGGCGCTGCCGGCAAACGCGAAGATCTCCAAAGATGCTAAAGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCATCACTGGAGAGGCCTCCGACAAGTGTCAGCGAGAGAAGCGGAAGACGATCAACGGCGACGACTTGCTGTGGGCGATGACGACTCTGGGGTTCGAGGAGTATGTGGAGCCCCTAAAGATATACCTGCAAAAGTACAGGGAGATGGAGGGCGAGAAGAGCTCCTTGGGAGGGAGGCCCGGCGAGAAGGACGGCTCCGGCGGGGGCGGAGCAGCTGCGGGAGGTGGGGGCGCGATGAGCTCCGGCAGCAGTGGGGGTTTCAATGGGGGTGGGATGTACGGTGGGATGATGATGATGGGGCATCATCAGGGACAGGCTTACGGCTCGGGTTCGTTTCATCACATGAGCAGCTCGGGCAGCGGTGGCGGCGGGGGCGGAGGAGTGGGTAAGAACAACACCGGCAGTTCGAGCGGCGGCGGTGGCGGGGTGGCGTCAACGGTGAGGTCAAGGCTTACAGGTGTCTTTATACTACAAAGTGCTAAAGTGCTAGCTTTCAAGAAGTGCACAACAGTTATCAAAGCCCAAAGCAGCAATGAGCCTCTTTATGTGCTCCTTAATGGACATGTAAGAGGAAGTCCTAAGCCCAAGCCCATGTATGCCCATGATAGACAAGTCATGGCCCGCAAGAGACGATTAACACCGAATCCTATTGACAACGATGATAGGGAATGCGAGGATGAGTAG 879 0.57 MADSDNDSGGHNNSNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEKSSLGGRPGEKDGSGGGGAAAGGGGAMSSGSSGGFNGGGMYGGMMMMGHHQGQAYGSGSFHHMSSSGSGGGGGGGVGKNNTGSSSGGGGGVASTVRSRLTGVFILQSAKVLAFKKCTTVIKAQSSNEPLYVLLNGHVRGSPKPKPMYAHDRQVMARKRRLTPNPIDNDDRECEDE* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0846 292 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Vvi12g0846 292 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Vvi12g0846 292 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Vvi12g0846 292 MobiDBLite consensus disorder prediction 194 208 - -
Vvi12g0846 292 MobiDBLite consensus disorder prediction 117 145 - -
Vvi12g0846 292 Gene3D Histone, subunit A 16 133 IPR009072 GO:0046982
Vvi12g0846 292 MobiDBLite consensus disorder prediction 1 22 - -
Vvi12g0846 292 MobiDBLite consensus disorder prediction 1 24 - -
Vvi12g0846 292 SUPERFAMILY Histone-fold 25 135 IPR009072 GO:0046982
Vvi12g0846 292 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Vvi12g0846 292 FunFam Nuclear transcription factor Y subunit B-3 17 137 - -
Vvi12g0846 292 MobiDBLite consensus disorder prediction 260 284 - -
Vvi12g0846 292 MobiDBLite consensus disorder prediction 173 208 - -
Vvi12g0846 292 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi12g0846 292 MobiDBLite consensus disorder prediction 257 292 - -
Vvi12g0846 292 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 165 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0846 Vvi-Chr12 9707828 9710605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0846 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.385 1.20e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vvi12g0846 CBFD_NFYB_HMF 3.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0846 K08065 - vvi:100261380 250.751