Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0842 ATGTCCTCAAAGTCTACTAACAAGACGAATTGTTCTAGGAGCAGCTCTGCTCGATCAAAACATGGCGCCCGTGTGGTGGCACAGACCCCAATTGATGCCCAGCTTCATGTGAACTTTGAGGAGTCTGAACGTCATTTTGATTACTCTGCTTCAGTTGACTTCAATATCTCAAGTTCCACTAGTGATGTCCCCTCTTCTACGGTCTCAGCTTACCTCCAAAAGATGCAGAGGGGAAACCTGATCCAACCATTTGGCTGCATGATTGCAGTTGATGAGCAGAATCTCACAGTTCTTGCCTACAGCGAAAATGCCCCTGAAATGTTGGACTTAGCCCCACATGCTGTTCCAAGCATTGAGCAGCAAGAGGCCTTGGCAATTGGAACAGATGTTCGGACACTCTTTCGATCCTCGGGGGCAGCTGCCTTGCAGAAAGCAGCCAATTTTGGGGAAGTCAATCTCCTCAATCCCATATTGGTCCATTGTAGAAACTCCGGTAAGCCCTTCTATGCAATTCTGCACCGAATTGATGTAGGGTTAATTATAGATTTGGAGCCAGTGAATCCAGCTGATGTCCCAGTTACAGCGGCTGGGGCATTAAAGTCATATAAGCTTGCTGCCAAAGCCATTTCAAGATTGCAATCTTTGCCAAGTGGGAATATATCACTGTTATGTGACGTGTTAGTCAAGGAAGCGAGTGAATTAACGGGTTATGATCGAGTGATGGTGTATAAATTTCATGAGGATGAGCATGGGGAAGTTATTGCAGAGTGCCGCAAACCCGACTTGGAACCCTATCTTGGTTTGCATTACCCAGCTACTGATATACCACAAGCTTCAAGATTCCTCTTCATGAAAAATAAGGTTAGGATGATATGTGATTGTTTGGCCCCGCCTGTTAAAGTTATTCAAAACAAAAGATTAGCTCAGCCATTGAGCCTCTGTGGATCCACATTGAGATCTCCTCATGGGTGTCATGCACAGTACATGGCGAATATGGGTTCGGTTGCATCGCTTGTGATGTCTGTGACCATCAATGAGGAAGATGATGATACAGAGAGTGAGCAACAAAAGGGAAGAAAATTGTGGGGCTTGGTGGTTTGCCATAATACAAGCCCTAGGTTTGTTCCGTTCCCTTTGAGGTATGCCTGTGAGTTTTTGGTTCAAGTTTTTGGTGTACAAATTAGCAAGGAAATGGAGCTAGCTGCCCAAATGAAGGAGAAGCATATTTTGCAGACACAAACCGTGCTTTGCGACATGCTCCTTAGAGATGCACCTGTAGGAATTGTTACTCAATCACCCAATGTGATGGACCTGGTTAGGTGTGATGGAGCTGCGCTCTACTACCAGAAGAAATTTTGGTTGCTTGGGGTCACCCCTACAGAGGCACAGATTAGAGATATAGTTGAGTGGCTTCTTGAGTACCACAGTGGGAGTACAGGCTTAAGTACTGATAGCCTGATGGAAGCTGGCTACCCAGCTGCCTCAGTTCTTGGTGATGCAGTTTGTGGGATTGCTGCCGTTAAGATTAATTCAAACGATTTCCTTTTTTGGTTCCGGTCCCACACGGCAAAGGAGATTAAGTGGGGTGGTGCAAAACATGATCCTGATGATAAGGATGATGGGAGAAAGATGCACCCTAGATCCTCATTCAAGGCTTTTCTGGAGGTGGTAAAGCGGCGGAGCCTACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCCTTGCAGCTGATATTGAGAGGCTCCTTGCAGGATAAGAGCGCAGATGACTCTAAAATGATTGTGAATGTTCCATCAGTTGATGCCAGCATAAAAATGGCTGATGACTTGCGCATAGTCACAAATGAAATGGTTCGTCTTATTGAAACAGCTTCTGTTCCCATCCTGGCTGTTGATGCCGCTGGTTGCATAAATGGGTGGAATAACAAAGCGGCCGAGCTAACAGGATTGATCATGCAGCAAGCCATTGGCATGCCCTTAATTAATCTTGTTGAGAATGATTCAGCCGACATGGTGAAGAAGATGCTCTCCATGGCATTGCAAGGTATAGAAGAGCAAAATGTTGAGATCAAACTCAAGACATTTGGTCCCCAGGAAAACAATGGCCCTGTTATATTGGTAGTTAATGCATGTTGTAGCCGAGACATAAAGGATAATGTCGTAGGGGTTTGCTTCGTTGGGCAAGATATCACAGGGCAAAAGATGGTTATGGACAAATATACTCGTATCCAAGGTGATTATGTTGGAATTGTGCGGAACCCATCTGCACTAATTCCTCCCATTTTTATGATGGACGAGCATGGTCGATGCTTGGAATGGAATGATGCAATGCAAAACTTGTCTGGTCTGAAGAGAGAAGAAGCCACTGATAGGATGCTTCTCGGGGAGGTTTTTACGGTCAATAATTTTGGTTGTCAGGTTAAAGATCATGACACATTAACCAAGCTCAGGATATTACTAAATGGAGCCATTGCAGGTCAGGATGCACAGAAATTGTTATTTGGGTTCTTTGATCAGCACGGTAAATACATTGAAGCATTACTTTCTGCAAACAAAAGGACTGATGCAGAGGGAAAGATCACTGGGGTTTTGTGTTTTTTGCACGTGGCTAGTCCTGAACTTCAACACGCCATGCAGGTGCAGAGAATATCGGAACAGGCTGCAGCTGATAGCCTCAAGAAATTGGCATATATTCGTCAGCAGATCAGGAAGCCTTTAAATGGAATAATGTTCATTCAGAATCTGATGGACTCATCTGAGCTAAGTCAAGACCAGAAAAAATTCCTGAGGACAAGCATGATGTGTCAAGAACAATTAACAAAGATCGTTGATGACACTGATCTCGAGAGCATTGAGGAATGCTATATGGAATTGAATTCTGGTGAGTTTAACCTAGGGGAAGTTTTGGAGGTTGTCATAAGTCAAGCGATGATTCTGAGCCGGGAGCGTCGGGTGGAGATCATCTATGATTCACCTGCTGAAGTGTCGTCCATGCTTTTGTATGGTGACAACTTGAGGCTTCAACAAGTCCTTTCAGATTTCTTAACAAATGCGCTTCTCTTCACCCCTGCATTTGAAGGATCATCAGTTGCACTCAGAGTAATTCCAAGAAGGGAGTGTATAGGGACAAAGGTTCACATTGTACATCTTGAATTTCGGATTGCCCATCCAGCACCTGGGATCCCAGAAGACTTGATCCAACAGATGTTTCACCACAGCCAGGGTGTATCAAGGGAAGGTCTTGGCCTATACATCAACCAAAAGCTTGTGAAGATCATGAACGGCACGGTTCAGTATCTCAGAGAGGCACAGGGATCATCCTTCATCATTCTCATAGAGTTCCCATTGGCTCACTAG 3357 0.4477 MSSKSTNKTNCSRSSSARSKHGARVVAQTPIDAQLHVNFEESERHFDYSASVDFNISSSTSDVPSSTVSAYLQKMQRGNLIQPFGCMIAVDEQNLTVLAYSENAPEMLDLAPHAVPSIEQQEALAIGTDVRTLFRSSGAAALQKAANFGEVNLLNPILVHCRNSGKPFYAILHRIDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVKEASELTGYDRVMVYKFHEDEHGEVIAECRKPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLAPPVKVIQNKRLAQPLSLCGSTLRSPHGCHAQYMANMGSVASLVMSVTINEEDDDTESEQQKGRKLWGLVVCHNTSPRFVPFPLRYACEFLVQVFGVQISKEMELAAQMKEKHILQTQTVLCDMLLRDAPVGIVTQSPNVMDLVRCDGAALYYQKKFWLLGVTPTEAQIRDIVEWLLEYHSGSTGLSTDSLMEAGYPAASVLGDAVCGIAAVKINSNDFLFWFRSHTAKEIKWGGAKHDPDDKDDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSLQDKSADDSKMIVNVPSVDASIKMADDLRIVTNEMVRLIETASVPILAVDAAGCINGWNNKAAELTGLIMQQAIGMPLINLVENDSADMVKKMLSMALQGIEEQNVEIKLKTFGPQENNGPVILVVNACCSRDIKDNVVGVCFVGQDITGQKMVMDKYTRIQGDYVGIVRNPSALIPPIFMMDEHGRCLEWNDAMQNLSGLKREEATDRMLLGEVFTVNNFGCQVKDHDTLTKLRILLNGAIAGQDAQKLLFGFFDQHGKYIEALLSANKRTDAEGKITGVLCFLHVASPELQHAMQVQRISEQAAADSLKKLAYIRQQIRKPLNGIMFIQNLMDSSELSQDQKKFLRTSMMCQEQLTKIVDDTDLESIEECYMELNSGEFNLGEVLEVVISQAMILSRERRVEIIYDSPAEVSSMLLYGDNLRLQQVLSDFLTNALLFTPAFEGSSVALRVIPRRECIGTKVHIVHLEFRIAHPAPGIPEDLIQQMFHHSQGVSREGLGLYINQKLVKIMNGTVQYLREAQGSSFIILIEFPLAH* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0842 1118 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Vvi12g0842 1118 FunFam Phytochrome 955 1116 - -
Vvi12g0842 1118 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 957 1113 IPR036890 -
Vvi12g0842 1118 FunFam Phytochrome 609 740 - -
Vvi12g0842 1118 Gene3D - 200 559 IPR029016 -
Vvi12g0842 1118 ProSiteProfiles PAC domain profile. 686 742 IPR000700 -
Vvi12g0842 1118 SMART HKATPase_4 1002 1118 IPR003594 -
Vvi12g0842 1118 Gene3D PAS domain 76 322 - -
Vvi12g0842 1118 SMART pas_2 745 815 IPR000014 -
Vvi12g0842 1118 SMART pas_2 615 681 IPR000014 -
Vvi12g0842 1118 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1002 1113 IPR003594 -
Vvi12g0842 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Vvi12g0842 1118 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Vvi12g0842 1118 PANTHER TWO-COMPONENT HISTIDINE KINASE 818 1114 - -
Vvi12g0842 1118 CDD PAS 624 730 IPR000014 -
Vvi12g0842 1118 SUPERFAMILY GAF domain-like 406 584 - -
Vvi12g0842 1118 CDD HATPase_Phy-like 1001 1114 IPR044767 -
Vvi12g0842 1118 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Vvi12g0842 1118 PIRSF Phytochrome_conventional 2 1118 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vvi12g0842 1118 Pfam PAS fold 616 730 IPR013767 GO:0006355
Vvi12g0842 1118 Pfam PAS fold 746 868 IPR013767 GO:0006355
Vvi12g0842 1118 Gene3D - 403 576 IPR043150 -
Vvi12g0842 1118 Gene3D PAS domain 759 872 - -
Vvi12g0842 1118 Gene3D - 955 1117 IPR036890 -
Vvi12g0842 1118 MobiDBLite consensus disorder prediction 1 22 - -
Vvi12g0842 1118 Gene3D PAS domain 606 743 - -
Vvi12g0842 1118 Pfam Phytochrome region 411 586 IPR013515 GO:0006355|GO:0009584
Vvi12g0842 1118 ProSiteProfiles PAS repeat profile. 755 798 IPR000014 -
Vvi12g0842 1118 CDD PAS 757 868 IPR000014 -
Vvi12g0842 1118 Pfam GAF domain 220 397 IPR003018 GO:0005515
Vvi12g0842 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 865 IPR035965 -
Vvi12g0842 1118 FunFam Phytochrome 403 534 - -
Vvi12g0842 1118 CDD HisKA 895 945 IPR003661 GO:0000155|GO:0007165
Vvi12g0842 1118 SUPERFAMILY GAF domain-like 199 395 - -
Vvi12g0842 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 618 726 IPR035965 -
Vvi12g0842 1118 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Vvi12g0842 1118 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Vvi12g0842 1118 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355|GO:0009584
Vvi12g0842 1118 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Vvi12g0842 1118 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Vvi12g0842 1118 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Vvi12g0842 1118 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Vvi12g0842 1118 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355|GO:0009584
Vvi12g0842 1118 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Vvi12g0842 1118 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Vvi12g0842 1118 ProSiteProfiles Histidine kinase domain profile. 897 1118 IPR005467 -
Vvi12g0842 1118 Pfam PAS fold 70 186 IPR013654 GO:0006355
Vvi12g0842 1118 SMART gaf_1 219 408 IPR003018 GO:0005515
Vvi12g0842 1118 MobiDBLite consensus disorder prediction 1 25 - -
Vvi12g0842 1118 NCBIfam PAS domain S-box protein 620 736 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0842 Vvi-Chr12 9664793 9670124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0842 9 1116 Histidine Kinase Gene Family AT5G35840 65.468 0.0 1563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0842 - - vvi:100258014 2208.72